| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4947 |
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| Symbol | putA |
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| ID | 1043945 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 5630466 |
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| End bp | 5634419 |
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| Gene Length | 3954 bp |
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| Protein Length | 1317 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637148348 |
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| Product | trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
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| Protein accession | NP_747050 |
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| Protein GI | 26991625 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
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| TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGACTA CCACCCTTGG GGTCAAACTC GACGACCCGA CCCGTGAGCG ACTCAAAGCA
GCTGCGCAGT CCATCGACCG CACGCCTCAC TGGTTGATCA AGCAAGCGAT CTTCAATTAC
CTGGAGAAGC TCGAGGGTGG TGCCACCCTG ACCGAACTCA ACGGTCATGC CAGCAACCCG
GCCGACGATG CCGGTGAAGT CCAGGCCGAC CACAGCCACC AGTGCTTCCT CGAATTTGCC
GAGAGCATCT TGCCGCAGTC GGTACTGCGC TCGGCGATCA CCGCCGCCTA CCGCCGCCCC
GAGCAGGAAG TGGTGCCGAT GCTGCTGGAG CAGGCGCGCC TGAGCGCGCC GCTGGCCGAC
GCCACCAACA AGCTGGCCGC AAGCATTGCC GAAAAACTGC GCAACCAGAA AAGCGTCGGC
GGCCGTGCCG GTATCGTCCA GGGCCTGCTG CAGGAATTCT CGCTGTCGTC TCAGGAAGGC
GTGGCGCTGA TGTGCCTGGC CGAAGCCCTG CTGCGTATCC CCGACAAAGG TACCCGTGAT
GCGCTGATCC GCGACAAGAT CAGTACCGGC AACTGGCAGC CGCACCTGGG CAACAGCCCG
TCACTGTTCG TCAACGCCGC CACCTGGGGG CTGCTGCTGA CCGGCAAGCT GGTCAGCACC
CATAACGAAA CCGGCCTCAC CTCCTCGCTC ACCCGCATCA TCGGCAAGAG CGGCGAGCCG
ATGATCCGCA AGGGCGTCGA CATGGCCATG CGCCTGATGG GTGAGCAGTT CGTCACCGGC
GAGACCATTG CCGAAGCCCT GGCCAACGCC AGCCGTTTCG AGGCCAAAGG CTTCCGTTAC
TCCTACGACA TGCTTGGCGA AGCCGCACTG ACCGAGCACG ACGCGCAGAA GTACCTGGCG
TCCTACGAGC AGGCCATCCA CTCGATCGGC AAGGCCTCGC ATGGCCGTGG CATCTATGAA
GGCCCAGGCA TCTCGATCAA GCTGTCGGCA CTGCACCCGC GCTACAGCCG GGCCCAGTAC
GAGCGCGTGA TGGAAGAGCT GTACCCGCGC CTGCTGTCGC TGACCCTGCT GGCCAAGCAG
TACGACATCG GCCTTAACAT CGACGCCGAA GAAGCCGACC GCCTGGAGCT TTCGCTGGAC
CTGCTCGAAC GCCTGTGCTT CGAGCCATCC CTGGCTGGCT GGAACGGCAT CGGCTTCGTT
ATCCAGGCCT ACCAGAAGCG CTGCCCGTAC GTGATCGACT ACGTCATCGA TCTGGCCAAG
CGCAGCCGCC ACCGCCTGAT GATCCGCCTG GTAAAAGGCG CCTACTGGGA CAGCGAGATC
AAGCGTGCCC AGGTCGAAGG CCTGGAAGGC TACCCGGTCT ATACCCGCAA GGTGTACACC
GACGTGTCCT ACGTCGCCTG CGCCCGCAAG CTGCTGGCCG TGCCAGAAGC CATCTACCCG
CAGTTCGCCA CCCACAACGC CCACACCCTG TCGGCCATCT ACCACATTGC CGGGCAGAAC
TATTACCCGG GCCAGTACGA GTTCCAGTGC CTGCACGGCA TGGGCGAACC GCTGTACGAG
CAAGTGGTCG GCAAGATTGC CGATGGCAAG CTGAACCGCC CGTGCCGCGT GTATGCACCG
GTCGGCACCC ATGAAACGCT GCTGGCCTAC CTGGTGCGCC GCCTGCTGGA AAACGGCGCG
AACACCTCGT TCGTCAACCG CATTGCCGAC CACTCGATTT CCATCCAGGA ACTGGTCGCC
GACCCGGTGG CCAGCATCGA GCGCATGGGT ACCCAGGAAG GCAGTATCGG CCTGCCGCAC
CCACGCATTC CCCTGCCGCG CGACCTGTAT GGCACCGAAC GGGCCAACTC GGCCGGCATC
GACATGGCCA ATGAACACCG CCTGGCGTCG CTGTCCTGCG CCATGCTGGC CACCGCTCAC
AACGACTGGA AGGCTGCCCC GCTGCTGGCC TGCGCCGCCA GCGAGAGCGC TGCCGCACCG
GTGCTGAACC CGGCTGACCA CCGCGACGTC GTCGGCCATG TGCAGGAGGC CACCGTTGCC
GACGTTGACA ACGCCATCCA GTGCGCACTG AACGCCGCGC CGATCTGGCA GGCCACCCCA
CCAGCCGAGC GTGCTGCCAT TCTGGAGCGC ACCGCCGACC TGATGGAGGC CGAGATCCAG
CCGCTGATGG GCCTGCTCAT CCGCGAGGCC GGCAAGACCT TCGCCAACGC CATTGCCGAA
GTGCGTGAAG CCGTGGACTT CCTGCGCTAC TACGCGGTGC AGGCACGTAA CGACTTCAGC
AACGACGCCC ACCGCCCACT GGGTCCTGTG GTGTGCATCA GCCCATGGAA CTTCCCGCTG
GCGATCTTCA CCGGCCAGGT GGCCGCAGCC CTGGCTGCCG GCAACCCGGT ACTGGCCAAG
CCTGCCGAGC AAACCCCACT GATCGCCGCC CAGGCCGTGC GCCTGCTGCT GGAAGCTGGC
ATCCCAGAAG GCGTGCTGCA GCTGCTGCCG GGCCGCGGTG AAACTGTCGG TGCCGGCCTG
GTCGGAGACG AGCGCGTCAA AGGCGTGATG TTCACCGGCT CCACTGAAGT GGCCCGCCTG
CTGCAGCGCA ACGTCGCTGG CCGTCTGGAC AACCAGGGCC GCCCGATCCC GCTGATCGCC
GAAACCGGCG GCCAGAACGC GATGATCGTC GACTCCTCGG CACTGACCGA ACAGGTCGTG
ATCGACGTGG TGTCCTCGGC CTTCGACAGT GCCGGCCAGC GTTGCTCGGC CCTGCGCGTA
CTGTGCTTGC AGGAAGACTC CGCCGACCGC GTAATCGAGA TGCTCAAGGG CGCCATGGCT
GAAAGCCGCC TGGGCTGCCC GGACCGCCTG GCCGTGGACA TCGGCCCGGT GATCGATGCC
GAAGCCAAAG CCGGCATCGA GAAGCACATC CAGGGCATGC GCGAGAAAGG CCGCCCGGTC
TACCAAGTCG CCATTGCCGA TGCTGCCGAG ATCAAGCGCG GCACCTTCGT CATGCCAACC
CTGATCGAGC TGGACAGCTT CGACGAGCTG AAGCGCGAAA TCTTCGGCCC CGTGCTGCAC
GTGGTGCGCT ACAACCGCCG CAATCTGGAC CAGCTGATCG AGCAGATCAA CAACTCCGGC
TACGGCCTGA CCCTCGGCGT GCACACCCGT ATCGACGAGA CCATCGCCAA AGTGGTGGAA
ACCGCCAACG CCGGCAACAT GTACGTCAAC CGCAACATTG TGGGTGCAGT GGTGGGCGTG
CAGCCGTTCG GTGGTGAAGG CCTGTCTGGC ACCGGCCCGA AAGCCGGCGG CCCGCTGTAC
CTCTACCGCC TGCTGTCGAC CCGCCCGGCC GACGCCATTG GCCGCCACTT CCAGCAGCAG
GACGGCGAAG GCACGCCGGA CCGCACCCTG CACGAACAGC TGGTAAAGCC GCTGCACGGC
CTGAAGGCCT GGGCCGAGAA CAACCAGCTG GCCGACCTGG CCGCGCTGTG CAGCCAGTTC
GCCAGCCAGT CGCAGAGCGG CATCGCCCGC CTGCTGCCAG GCCCGACCGG CGAGCGCAAC
AGCTACACCA TTCTGCCGCG TGAGCACGTG CTGTGCCTGG CCGACAACGA AACCGACCTG
CTGGCGCAGT TCGCCGCGGT ACTGGCCGTT GGCAGCTCGG CGGTGTGGGT TGACGGTGAA
CCGGGCAAGG CCCTGCGCGC CCGCCTGCCG CGTGAGCTGC AGGCCAAGGT GAAGCTGGTC
GCGGACTGGA ACAAGGATGA AGTGGCGTTC GACGCCGTGA TCCACCATGG CGACTCGGAC
CAGCTGCGCG GCGTATGCCA GCAGGTGGCC AAGCGTGCCG GGGCGATCGT TGGGGTGCAC
GGGCTGTCCA GCGGGGATCA CCAGATTGCG CTGGAGCGCC TGGTCATCGA GCGCGCGGTG
AGCGTGAACA CTGCAGCGGC GGGTGGTAAC GCCAGCCTGA TGACCATTGG CTAA
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| Protein sequence | MATTTLGVKL DDPTRERLKA AAQSIDRTPH WLIKQAIFNY LEKLEGGATL TELNGHASNP
ADDAGEVQAD HSHQCFLEFA ESILPQSVLR SAITAAYRRP EQEVVPMLLE QARLSAPLAD
ATNKLAASIA EKLRNQKSVG GRAGIVQGLL QEFSLSSQEG VALMCLAEAL LRIPDKGTRD
ALIRDKISTG NWQPHLGNSP SLFVNAATWG LLLTGKLVST HNETGLTSSL TRIIGKSGEP
MIRKGVDMAM RLMGEQFVTG ETIAEALANA SRFEAKGFRY SYDMLGEAAL TEHDAQKYLA
SYEQAIHSIG KASHGRGIYE GPGISIKLSA LHPRYSRAQY ERVMEELYPR LLSLTLLAKQ
YDIGLNIDAE EADRLELSLD LLERLCFEPS LAGWNGIGFV IQAYQKRCPY VIDYVIDLAK
RSRHRLMIRL VKGAYWDSEI KRAQVEGLEG YPVYTRKVYT DVSYVACARK LLAVPEAIYP
QFATHNAHTL SAIYHIAGQN YYPGQYEFQC LHGMGEPLYE QVVGKIADGK LNRPCRVYAP
VGTHETLLAY LVRRLLENGA NTSFVNRIAD HSISIQELVA DPVASIERMG TQEGSIGLPH
PRIPLPRDLY GTERANSAGI DMANEHRLAS LSCAMLATAH NDWKAAPLLA CAASESAAAP
VLNPADHRDV VGHVQEATVA DVDNAIQCAL NAAPIWQATP PAERAAILER TADLMEAEIQ
PLMGLLIREA GKTFANAIAE VREAVDFLRY YAVQARNDFS NDAHRPLGPV VCISPWNFPL
AIFTGQVAAA LAAGNPVLAK PAEQTPLIAA QAVRLLLEAG IPEGVLQLLP GRGETVGAGL
VGDERVKGVM FTGSTEVARL LQRNVAGRLD NQGRPIPLIA ETGGQNAMIV DSSALTEQVV
IDVVSSAFDS AGQRCSALRV LCLQEDSADR VIEMLKGAMA ESRLGCPDRL AVDIGPVIDA
EAKAGIEKHI QGMREKGRPV YQVAIADAAE IKRGTFVMPT LIELDSFDEL KREIFGPVLH
VVRYNRRNLD QLIEQINNSG YGLTLGVHTR IDETIAKVVE TANAGNMYVN RNIVGAVVGV
QPFGGEGLSG TGPKAGGPLY LYRLLSTRPA DAIGRHFQQQ DGEGTPDRTL HEQLVKPLHG
LKAWAENNQL ADLAALCSQF ASQSQSGIAR LLPGPTGERN SYTILPREHV LCLADNETDL
LAQFAAVLAV GSSAVWVDGE PGKALRARLP RELQAKVKLV ADWNKDEVAF DAVIHHGDSD
QLRGVCQQVA KRAGAIVGVH GLSSGDHQIA LERLVIERAV SVNTAAAGGN ASLMTIG
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