| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4909 |
|---|
| Symbol | serB |
|---|
| ID | 1041911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 5579613 |
|---|
| End bp | 5580860 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637148310 |
|---|
| Product | phosphoserine phosphatase SerB |
|---|
| Protein accession | NP_747012 |
|---|
| Protein GI | 26991587 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0560] Phosphoserine phosphatase
[COG3830] ACT domain-containing protein |
|---|
| TIGRFAM ID | [TIGR00338] phosphoserine phosphatase SerB
[TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.45946 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATTT TTCATCGAAG TCGGAGCCAG GTTGTGCGCG AAATCGTCCT GATCAACATC
ACCGGTGAGG ACCGTCCCGG TCTCACTGCG GCTATCACCG GCGTCCTGCT GCAGGGCGGT
GTGAGTATCC TCGACATCGG CCTGGCGGTC ATGCACGGCA CCTTGTCGTT TGGCATCCTG
GTCGACATCC CGGACAACGA AGTGGCTACC GCGCTGTTGC AAAGCGTGCA GGCCAAAGCC
CACGAACTGA ACCTGCAGGC CCGTTACACG CCGATTTCCG AGGCGGACTA CCAGCATTGG
GCCGATGGGC ATGGCGAAGC GCGACACATC GTTACCCTGC TCAGCCGCAA GATCACACCC
GAGCAGCTGC AGCGGGTGAG TGCGGTGATC AGCCAGTACG GCCTGACCAT CGAGCGTATC
GAGCGCCTGT CGGCCCGGGT GGCACTGGAT GCCGAAATCG ACAAGGGCAA GGCAGCCGTC
GAGATCTCCG TGCGTGGCGT GCCGAGCGAT GCCCAGGCCC TGCGTGCCGA CTTCTTTGCC
CTGGCTGAAG AGCTGAGCGT CGACATCGCC TTCCAGAAGG ACGATCTGTT CCGCCGCAAC
CGCCGCCTGG CGGTGTTCGA CATGGACTCC ACGCTGATCG AGGCCGAAGT CATCGACGAA
CTGGCCAAGG CGGCGGGTGT GGGGGAGCAG GTGGCGGCGA TCACCGAGCG CGCCATGCGC
GGTGAACTGG ACTTCCGCGC CAGCTTCAAA GAGCGCATGG CACTGCTCAA GGGCCTGGAT
GTGGGGGTGC TGGACGAGAT CGGGGCATCG CTGCGCCTGA CCGAGGGTGC CGAGAACCTG
TTTGCCGAGC TCAAGCGCCT GGGATACAAG ACCGCGATTC TGTCCGGTGG CTTTACCTAT
TTCGCTCGTC AGGTGCAGGC GCGCCTGGGT ATCGACTATG TGTTCGCCAA CGAACTTGAA
GTGGTCGATG GCAAGGTGAC GGGCGTGGCT GTTGAGCCGA TTGTCGATGC CCAGCGCAAG
GCCGATTTGT TGAAGAAGCT GGCCAGCGAC GAAGGCTTGC AACTGGAGCA GACCATCGCC
GTGGGCGATG GCGCCAATGA CCTGCCGATG CTGTCGCTGG CTGGGTTGGG CGTGGCGTTT
CGTGCCAAGC CGCTGGTGCG CCAGTCGGCC AAGCAGGCGA TTTCCACCTT GGGGCTGGAC
GGGGTGCTGT ACCTGCTGGG CCTGCGTGAT CGCGACGCCC GCGGCTGA
|
|---|
| Protein sequence | MRIFHRSRSQ VVREIVLINI TGEDRPGLTA AITGVLLQGG VSILDIGLAV MHGTLSFGIL
VDIPDNEVAT ALLQSVQAKA HELNLQARYT PISEADYQHW ADGHGEARHI VTLLSRKITP
EQLQRVSAVI SQYGLTIERI ERLSARVALD AEIDKGKAAV EISVRGVPSD AQALRADFFA
LAEELSVDIA FQKDDLFRRN RRLAVFDMDS TLIEAEVIDE LAKAAGVGEQ VAAITERAMR
GELDFRASFK ERMALLKGLD VGVLDEIGAS LRLTEGAENL FAELKRLGYK TAILSGGFTY
FARQVQARLG IDYVFANELE VVDGKVTGVA VEPIVDAQRK ADLLKKLASD EGLQLEQTIA
VGDGANDLPM LSLAGLGVAF RAKPLVRQSA KQAISTLGLD GVLYLLGLRD RDARG
|
|---|
| |