| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4894 |
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| Symbol | hfq |
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| ID | 1042020 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 5564255 |
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| End bp | 5564515 |
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| Gene Length | 261 bp |
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| Protein Length | 86 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637148295 |
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| Product | RNA-binding protein Hfq |
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| Protein accession | NP_746997 |
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| Protein GI | 26991572 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1923] Uncharacterized host factor I protein |
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| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.249233 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCAAAAG GGCATTCGCT ACAAGACCCT TACTTGAACA CCTTGAGAAA AGAAAAGGTC
CCGGTATCCA TTTACCTGGT CAACGGTATC AAACTGCAGG GCTCGATCGA ATCGTTCGAC
CAGTTCGTGG TATTGCTGAA GAACACCGTC AGCCAGATGG TCTACAAGCA CGCCATCTCG
ACCGTAGTTC CGGCCCGTCC GGTCCGCCTG CCAAGCCCGA CCGACAGCGA GCACGGCGAC
AGCGAGCCAG GCAACGCCTG A
|
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| Protein sequence | MSKGHSLQDP YLNTLRKEKV PVSIYLVNGI KLQGSIESFD QFVVLLKNTV SQMVYKHAIS
TVVPARPVRL PSPTDSEHGD SEPGNA
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