| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4880 |
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| Symbol | vacB |
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| ID | 1044105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 5546477 |
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| End bp | 5549050 |
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| Gene Length | 2574 bp |
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| Protein Length | 857 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637148280 |
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| Product | ribonuclease R |
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| Protein accession | NP_746984 |
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| Protein GI | 26991559 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGATT GGCAATCCCT CGATCCCGAG GCCGCTCGCG AAGCGGAAAA ATACGACAAC
CCCATTCCCA GCCGTGAGCT GATCCTGCAG CGTCTCGCCG ACCGAGGCGA ACCTGCTGCC
CGCGAGGAGC TGGCAAAAGA GTTCGGTCTG TATGAAGAAG ACCAGATCGA AGCCCTGCGC
CGCCGCCTGC GTGCCATGGA GCGCGATGGC CAGCTTATCT ATACCCGGCG CGGCACTTAT
GCCCCGGTAG ACAAGCTGGA CCTGATCTGT GGTCGCGTCT CCGGCCACCG CGACGGCTTC
GGCTTCCTTA TTCCCGATGA CGGCAGCGAA GACCTGTTCC TCAGCCCGTC GCAGATGCGA
CTGGTGTTCG ACGGCGACCG CGGCTTGGCC CGCGTCTCCG GTGTCGACCG CCGTGGCCGC
CGTGAAGGCG TGCTGGTCGA AGTCATCTCC CGTGCCCACG AAAGCGTGGT CGGCCGCTAT
TTCGAAGAAG GCGGCATCGG CTACGTGACC CCGGACAACC CGAAGATCCA GCAGGAAGTG
CTGGTGACCG CCGGGCGCAA CGGCGGTGCC AAGATCGGCC AGTTCGTCGA GATCAAGATC
ACCCACTGGC CGACTCCGCG CTTCCAGCCG CAAGGCGATG TGGTCGAAGT CATCGGCAAC
TACATGGCGC CGGGCATGGA AATCGACGTT GCCCTGCGCA GCTACGACAT TCCGCACGTC
TGGCCCAATG ATGTGGTCAA GGAAGCACGC AAGTTCCGCT CCGAAGTCGA GGAGAAGGAC
AAAGAGAAGC GTGTCGACCT GCGTCATCTG CCGTTCGTCA CCATCGACGG TGAAGACGCC
CGCGACTTCG ACGATGCCGT TTATTGCGAA CCGCTGGGCA AGCTGCGTCT GTTCTCCGGT
GGCTGGCGCC TGTACGTGGC CATCGCTGAC GTCTCCAGCT ATGTGCGTCT GGGCTCTGCC
CTGGATGTCG AAGCCCAGCA GCGCGGTAAC TCGGTGTACT TCCCCGAGCG CGTGGTGCCG
ATGCTCCCCG AAGAGCTGTC CAACGGCCTG TGCTCGCTGA ACCCGCATGT CGACCGGTTG
GCCATGGTCT GTGAAATGAC CATGAACAAA GCCGGCCAGA TGGTCGACTA TCAGTTCTAC
GAAGGCGTGA TCCACTCCCA TGCCCGTCTG ACCTACAACA AGGTCAGCAG CATGCTCGAG
CACTCGCGTA CCCGTGAGGG CAAGGCGCTG CGCGAAGAGT ACAAGGAGGT CGTGCCGGAC
CTGAAGAACC TGTACAACCT GTACAAGGTG CTGGTGGAGG CGCGCCACAC CCGGGGTGCC
ATCGACTTCG AGACCCAGGA AACCCGCATC ATCTTCGGCG AGGAGCGCAA GATCGCCGAA
ATCCGCCCGA CCGTGCGCAA CGACGCCCAC AAGCTGATCG AGGAATGCAT GCTGGCGGCC
AACGTGGCCA CCGCCGAGTT CCTGCAGAAG CACGGCGTAC CGGCCCTGTA CCGCGTGCAC
GACGGCCCGC CGCCGGAGCG CCTGGAAAAA CTGCGCGCCT TCCTCGGCGA GTTGGGCCTT
AGCCTGCACA AGGGCAAGGA CCCGTCGCCG AAGGACTACC AGGCCCTGCT GGCGAGCATC
GCCGGTCGCC CGGACTTCCA CCTGATCCAG ACGGTGATGC TGCGCTCGCT GAGCCAGGCC
GTGTACAGCA CCGAGAACAA CGGCCACTTC GGCCTGAACT ACGAGGCGTA CACCCACTTC
ACCTCGCCGA TCCGTCGTTA CCCGGACCTG CTGGTGCATC GCGCCATCCG CAGCATCATC
CGCTCCAAGG TCGATACCCC GCACGTCAAG CGTGCCGGCG CCATGAGCAT TCCCAAGGCG
CGTATCTACC CGTACGACGA GAACACCCTG GAGCAACTCG GCGAGCAGTG CTCGATGACC
GAGCGCCGGG CCGACGAAGC CACCCGTGAC GTGGTCAACT GGCTCAAGTG CGAGTTCATG
AAAGACCGCG TGGGCGAGAC CTTCCCGGGT GTGATCACTG CGGTGACCGG TTTCGGCCTG
TTCGTCGAAC TGACCGATAT CTATGTAGAG GGCTTGGTGC ACGTCAGTGC GTTGCCGGGT
GACTACTACC ACTTCGACCC GGTACACCAT CGCCTGGCCG GCGAGCGCAC CGGTCGCAGC
TTCCGCTTGG GCGACACCAT CGAAGTCAAG GTCATGCGTG TTGATCTGGA TGAGCGCAAG
ATCGACTTCG AAGTGTCGGA AAAGACCCTC GCCGCACCGA TCGGCCGCAA GCAGCGTGGC
GCCGCACCGG TTGCTGAAAA AGCCGAGCAG CAGCCGGCAA CCGAAGCGAA AGCCACGCCC
AAGCCGCGCA GCCGCAAAAG CGAAGCGTCC GAAGCGTACT TCCCCAAGGA TGCTGTGCAG
CGTAACGCAG AAGTGCGTAA AAGCCGCGAG ATGAAAAAAG CGCTGATGAC CGACGCGCGC
AGCAGTGCTG GCAGCAAATC GGAGAAAGGT GGCAAGCCGT CCGGCAAACC GACCAAGCAC
CGTAAAGGCC CGCCGAAGTC CGGCGCTCCA CGCAAAAACA AGAGCAATTC ATGA
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| Protein sequence | MADWQSLDPE AAREAEKYDN PIPSRELILQ RLADRGEPAA REELAKEFGL YEEDQIEALR
RRLRAMERDG QLIYTRRGTY APVDKLDLIC GRVSGHRDGF GFLIPDDGSE DLFLSPSQMR
LVFDGDRGLA RVSGVDRRGR REGVLVEVIS RAHESVVGRY FEEGGIGYVT PDNPKIQQEV
LVTAGRNGGA KIGQFVEIKI THWPTPRFQP QGDVVEVIGN YMAPGMEIDV ALRSYDIPHV
WPNDVVKEAR KFRSEVEEKD KEKRVDLRHL PFVTIDGEDA RDFDDAVYCE PLGKLRLFSG
GWRLYVAIAD VSSYVRLGSA LDVEAQQRGN SVYFPERVVP MLPEELSNGL CSLNPHVDRL
AMVCEMTMNK AGQMVDYQFY EGVIHSHARL TYNKVSSMLE HSRTREGKAL REEYKEVVPD
LKNLYNLYKV LVEARHTRGA IDFETQETRI IFGEERKIAE IRPTVRNDAH KLIEECMLAA
NVATAEFLQK HGVPALYRVH DGPPPERLEK LRAFLGELGL SLHKGKDPSP KDYQALLASI
AGRPDFHLIQ TVMLRSLSQA VYSTENNGHF GLNYEAYTHF TSPIRRYPDL LVHRAIRSII
RSKVDTPHVK RAGAMSIPKA RIYPYDENTL EQLGEQCSMT ERRADEATRD VVNWLKCEFM
KDRVGETFPG VITAVTGFGL FVELTDIYVE GLVHVSALPG DYYHFDPVHH RLAGERTGRS
FRLGDTIEVK VMRVDLDERK IDFEVSEKTL AAPIGRKQRG AAPVAEKAEQ QPATEAKATP
KPRSRKSEAS EAYFPKDAVQ RNAEVRKSRE MKKALMTDAR SSAGSKSEKG GKPSGKPTKH
RKGPPKSGAP RKNKSNS
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