| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4840 |
|---|
| Symbol | cycA |
|---|
| ID | 1043154 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 5506737 |
|---|
| End bp | 5508143 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637148241 |
|---|
| Product | D-alanine/D-serine/glycine permease |
|---|
| Protein accession | NP_746945 |
|---|
| Protein GI | 26991520 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.317801 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.122354 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCAAA CCTCACCCAT AGCGACAGAT GAACCGCACC TGCAACGCAA CCTGACCAAC
CGCCACATCC AGCTGATCGC CATCGGCGGC GCGATCGGTA CCGGTCTGTT CATGGGCTCA
GGCAAGACCA TCAGCCTGGC CGGGCCATCG ATCATCTTCG TCTACATGAT TATCGGCTTC
ATGCTGTTCT TCGTCATGCG CGCCATGGGC GAACTGCTGC TGTCGAACCT GAACTACAAG
TCGTTCATCG ACTTTTCCGC CGACCTGCTC GGCCCCTGGG CCGGCTACTT TACTGGCTGG
ACCTACTGGT TCTGCTGGGT GGTCACCGGC ATTGCCGACG TGGTCGCGAT CGCCGCCTAC
ACCCAGTTCT GGTTCCCCGA CCTGCCGCAG TGGATACCGG CGCTGACCTG CGTAGGGCTG
CTGCTGTCGC TGAACCTGGT CACCGTGAAA ATGTTCGGCG AACTGGAGTT CTGGTTCGCC
CTGGTCAAGA TCGTTGCCAT CCTCGGCCTG GTCGCTACCG GCCTGTACAT GGTCATCACC
GGCTTCACCT CGCCCAGCGG GCGCACCGCC CAGCTGGCCA ACCTGTGGAA TGACGGCGGC
ATGTTCCCCC ATGGCCTGAT GGGCTTCTTC GCCGGTTTCC AGATCGCCGT GTTCGCCTTC
GTCGGCATCG AGCTGGTGGG TACCACCGCC GCCGAAGCGA AGAACCCGGA ACGCACCCTG
CCGCGGGCGA TCAACTCGAT CCCGATCCGT ATCATCGTGT TCTATGTGCT GGCGCTGATC
GCGATCATGG CCGTGACCCC GTGGCGCGAT GTGGTGCCCG GAAAAAGCCC GTTCGTTGAG
TTGTTCGTGC TGGCAGGCTT GCCGGCGGCG GCAAGCATCA TCAACTTCGT GGTGCTGACC
TCGGCGGCTT CGTCGGCCAA CAGCGGCGTG TTCTCCACCA GCCGCATGCT CTACGGCCTG
TCGCAGGAAG GTGACGCGCC CAAGGCTTTC GAGAAGCTGT CGAGCCGTTC GGTGCCGGCC
AACGGCCTGT ATTTCTCGTG CACCTGCCTG TTGCTCGGTG CGGTGCTGAT CTACCTGGTG
CCGAACGTGG TCGAGGCATT CACCCTGGTC ACCACCGTGT CGGCGGTACT GTTCATGTTC
GTGTGGACGC TGATCCTGCT GTCATACCTG AAGTACCGCA AAGACCGCGC GGCGCTGCAC
CAGGCATCGA ACTACAAGAT GCCGGGCGGG CGCTTCATGT GCTACGTGTG CCTGTCGTTC
TTTGCGTTCA TCCTGGTGTT GCTGAGCCTG GAGGCGGATA CCCGTTCAGC ACTGGTGGTG
ACACCGATCT GGTTTGTCGT GCTGGCGGTG ACCTACCAGC TCGTACGCAG CAGGCGCCAT
CCCCGCACGG CCGTGCGTAA CGGCTGA
|
|---|
| Protein sequence | MTQTSPIATD EPHLQRNLTN RHIQLIAIGG AIGTGLFMGS GKTISLAGPS IIFVYMIIGF
MLFFVMRAMG ELLLSNLNYK SFIDFSADLL GPWAGYFTGW TYWFCWVVTG IADVVAIAAY
TQFWFPDLPQ WIPALTCVGL LLSLNLVTVK MFGELEFWFA LVKIVAILGL VATGLYMVIT
GFTSPSGRTA QLANLWNDGG MFPHGLMGFF AGFQIAVFAF VGIELVGTTA AEAKNPERTL
PRAINSIPIR IIVFYVLALI AIMAVTPWRD VVPGKSPFVE LFVLAGLPAA ASIINFVVLT
SAASSANSGV FSTSRMLYGL SQEGDAPKAF EKLSSRSVPA NGLYFSCTCL LLGAVLIYLV
PNVVEAFTLV TTVSAVLFMF VWTLILLSYL KYRKDRAALH QASNYKMPGG RFMCYVCLSF
FAFILVLLSL EADTRSALVV TPIWFVVLAV TYQLVRSRRH PRTAVRNG
|
|---|
| |