| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4824 |
|---|
| Symbol | |
|---|
| ID | 1041944 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 5486669 |
|---|
| End bp | 5489440 |
|---|
| Gene Length | 2772 bp |
|---|
| Protein Length | 923 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637148225 |
|---|
| Product | integral membrane sensor hybrid histidine kinase |
|---|
| Protein accession | NP_746929 |
|---|
| Protein GI | 26991504 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.688381 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGTCGGC TTCGGATTGC CTCAGCTCTG ATCGTCAGCT TGCTGACCCT GCTCTGCATG
TTTCCGGCTG CGGCCGAACA TGACGGTGGC TGGACCGTTC TGCTCGACGA ACAGGCCAAC
CTGCAACTGA GCGATGTGCG CTCCGAGCGC TATCGCAACC AGTTCAGCCC ACTGCCTCTC
GCCGACCTTG ATGCTGCCCC GGCTGGACAG GCCTTGTGGC TGCACTATCG TCTGGCACCA
GGTGACCAGG AGCAGCTGCT GCGGGTATTT GCCCCGGACC TTTCTGGCCT GGACCTCTAC
GCCCTCGAAG GCGAACAACT TCTGCGTCAG CTGCACCACG GGCGCCAGGC CGGCAATGCC
AGCCCGACCC TGCGTGGCAG CGACCATGTA TTGCCCCTGC CCAACAGCAG GCAACCGCTG
GACATCTACC TGCGCCTGGT CTCAGAGCAC CAGCTGCGTC CGGCCATCAG CCTTGAGCCT
GCGGCCGAGG CAGCCTCGGA TCAACGCCAG CCGCTGCTGT TCGGCATGCT GTTCGGCGGC
CTGATCATGC TGATCATGCA CAACCTGATC CGCTTCCTCT ACACCCGCTC CAGCACCACC
CTGATCCTGG CGCTGTACCA CGGCCTGATG CTGCTCAGCG GCCTGATCCT GCTGAACCTC
AGCGGCCCTT GGTGGCATGT GTGGCACAGT GCGCAAACGC CTGCCGCCTA TCTGACGCTG
GTCCTGGCCG GCCTGTCCGG GTTGTATTTC ACTCAACATT TCTTTTCGCC GTGCAATTCG
CCCCGGCTTA ACCGCCTGCT GCAGGGTGAG ATGCTGATTG TCGGGCTCAG TGGCCTGGTG
CTGCTGTTCG TCGATACCCT GCCACTGAAC CTGATGACCT ACGCCCTGAT GGCGCTGGGC
AGCGTGAGCA TGCTGCTGGT CAGCAGCTAC CACTGGTACA AGGGTTATGC GCCCGGACGC
CTGTTCAGCC TGGCCATGGT GGTGTTCAAC CTCGGAGGCC TGGTACTGCT GCCAGCCCTG
CTGGGCCTGA CACGCACCTC GACACCCTGG CTGCTGTGTA TCCTGCTGGG CCTGACCGTG
GTCAGTGGCC TGCTCCTCAA CCTGGCGGTC AGTGAACGGC TGCGGCGCAT AAGCGAGGAG
CGTTTCAGCG CCAGCCGTGC ACTGGCCGCC AGCGATGCGG AAATCAACGC CAAAGCCGAG
TTTCTGGCCA AGATCAGCCA CGAAATCCGC ACCCCGATGA ACGGCGTGCT CGGCATGACT
GAACTGCTGC TGGGCACACC GCTGTCGGTG AAGCAACGTG ATTATGTGCA GACCATCCAC
AGCGCGGGCA ACGAGCTGCT GACGCTGATC AACGAAATTC TGGACATTTC CAAGCTGGAA
TCCCGGCAGA TCGAGCTGGA TGACGTGCAG TTCGACCTTA ACGCGCTGAT CGAGGATTGC
CTGAACATCT TCCGCGCCAA GGCCGAGCAA CAGAACATCG AGCTGATCAG CTTCACCCAG
CCACAAGTAC CGCGGGTCAT CAGCGGAGAC CCGACGCGTC TGCGCCAGGC CTTGTCGAGC
CTGCTGGAAA ACGCCCTGAA AAACACCGAC CAGGGCGAGA TCCTGCTGGT GGTGGCGCTG
GATCAACGCG GCGAGGTGCC ACGCCTGCGT ATCGCCGTGC AGGACAGCGG CGAGCCGTTG
CCCGCCGCCG ACCGTGAAGC CTTGCTGCAG GCCGAGTTGC ACAGCCACCA TTTCCTTTCC
AGCAACAAGC TGGGCGGCCA TCTGGGGCTG GTCATTGCCA AACAGCTGAT CGGTCTGATG
CAGGGCGAGT TCGGCATCAA GAGCAGCACC GGCATGGGCA ACACCTTGTG GCTGACCTTG
CCGCTGGACC CTTCGCGCCT GGAACAGCCA CCAGCGGACC TCGACAGCCC GCTGCGCGAT
GCCCGCGTGC TGGTGGTCGA CGACAACGAC ACGTGCCGCA AGGTGCTTGT ACAGCAGTGC
AGTGCCTGGG GCATGAACGT CAGCGCGGTG CCGTCAGGCA AGGAGGCTCT GGCCCTTTTG
CGCACCAAGG CGCACCTGCG CGACTACTTC GACGCGGTGC TGCTGGACCA GAACATGCCC
GGCATGACCG GCATGCAGCT GGCCGCCAAG ATCAAGGAAG ACCCGAGCCT GAACCACGAC
ATTTTGGTGG TGATGCTCAC CGGCATCAGC AATGCGCCGA GCAAAGTCAT CGCGCGCAAC
GCCGGGGTCA AGCGAATACT GGCCAAGCCG GTGGCCGGTT ATACGTTGAA GACCACCCTG
GCCGAGGAGC TGGCCCAGCG CGGCCGCGAA CAGGCGATGC CTGCCAGCCT GCCTGGCATC
CCGCAGGCGC TGGACCTGCC AGGCGACTTC CGCGTGCTGG TCGCCGAAGA CAACAGCATC
TCGACCAAGG TGATCCGCAG CATGCTCGGC AAGCTCAACC TCAAGCCCGA TACCGCCTGC
AATGGCGAAG AGGCCTTGCA GGCGATGAAA GCGCAGCATT ATGACCTGGT GTTGATGGAC
TGCGAGATGC CGATACTGGA CGGTTTCTCG GCCACCCAGC AGTTGCGGGC CTGGGAAGCT
GAAAACCAGC GCCAGCGCAC GCCGGTGGTG GCACTGACAG CGCACATACT GGCCGAACAC
AAGGAGCGCG CGCGGCTGGC AGGCATGGAC GGACACATGG CCAAACCGGT GGAGTTGTCG
CAGTTGCGTG AGCTGATTCA ATACTGGGCC AATCACCGGG AAGCCAAGGT GGACCCGGCA
CATACGTCCT GA
|
|---|
| Protein sequence | MRRLRIASAL IVSLLTLLCM FPAAAEHDGG WTVLLDEQAN LQLSDVRSER YRNQFSPLPL
ADLDAAPAGQ ALWLHYRLAP GDQEQLLRVF APDLSGLDLY ALEGEQLLRQ LHHGRQAGNA
SPTLRGSDHV LPLPNSRQPL DIYLRLVSEH QLRPAISLEP AAEAASDQRQ PLLFGMLFGG
LIMLIMHNLI RFLYTRSSTT LILALYHGLM LLSGLILLNL SGPWWHVWHS AQTPAAYLTL
VLAGLSGLYF TQHFFSPCNS PRLNRLLQGE MLIVGLSGLV LLFVDTLPLN LMTYALMALG
SVSMLLVSSY HWYKGYAPGR LFSLAMVVFN LGGLVLLPAL LGLTRTSTPW LLCILLGLTV
VSGLLLNLAV SERLRRISEE RFSASRALAA SDAEINAKAE FLAKISHEIR TPMNGVLGMT
ELLLGTPLSV KQRDYVQTIH SAGNELLTLI NEILDISKLE SRQIELDDVQ FDLNALIEDC
LNIFRAKAEQ QNIELISFTQ PQVPRVISGD PTRLRQALSS LLENALKNTD QGEILLVVAL
DQRGEVPRLR IAVQDSGEPL PAADREALLQ AELHSHHFLS SNKLGGHLGL VIAKQLIGLM
QGEFGIKSST GMGNTLWLTL PLDPSRLEQP PADLDSPLRD ARVLVVDDND TCRKVLVQQC
SAWGMNVSAV PSGKEALALL RTKAHLRDYF DAVLLDQNMP GMTGMQLAAK IKEDPSLNHD
ILVVMLTGIS NAPSKVIARN AGVKRILAKP VAGYTLKTTL AEELAQRGRE QAMPASLPGI
PQALDLPGDF RVLVAEDNSI STKVIRSMLG KLNLKPDTAC NGEEALQAMK AQHYDLVLMD
CEMPILDGFS ATQQLRAWEA ENQRQRTPVV ALTAHILAEH KERARLAGMD GHMAKPVELS
QLRELIQYWA NHREAKVDPA HTS
|
|---|
| |