Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_4796 |
Symbol | holA |
ID | 1041615 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 5459580 |
End bp | 5460617 |
Gene Length | 1038 bp |
Protein Length | 345 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637148197 |
Product | DNA polymerase III subunit delta |
Protein accession | NP_746901 |
Protein GI | 26991476 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1466] DNA polymerase III, delta subunit |
TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.306681 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACTCG CCCCCGCCCA ACTCAACAAG CACCTGCAAG GCGCCCTGGC ACCGGTCTAC GTGGTCAGTG GCGACGACCC GCTGCTGTGC CAGGAAGCCG CCGACGCCAT CCGCAATGCC GCGCGTCAGC AAGGTTTCGA TGAACGCCAG GTATTCAGTG CCGACGCCAA CTTCGACTGG GGCACCCTGC TCCAGGCCGG TGCAAGCCTG TCGCTGTTCG CCCAGCGCCG CCTGCTGGAA CTGCGCCTGC CCTCGGGCAA GCCCGGTGAC AAGGGTGCCG CTGCGCTGAT GGAATACTGC GCCAACCCCG CCGAAGACAC GCTGCTGCTG ATCAGCCTGC CCAAGCTCGA CAGCAGTGCG CAGAAGACCA AGTGGGGCAA GGCATTGATC GAAGGCGCCC ATTGCCAGTT CATCCAGATC TGGCCGGTGG ATGTGCACCA GCTCCCGCAG TGGATCAACC AGCGCCTGCA ACAGGCCGGC CTGTCAGCCC AGCGTGATGC CGTCGACCTG ATTGCCGCGC GCGTGGAAGG CAACCTGCTG GCAGCCGCGC AGGAAATCGA AAAACTCAAG CTGCTGGCCG AAGGCAGCCA GATCACCGTG GAAACCGTGC AGGCTGCCGT CGCCGACAGT GCCCGCTTCG ATGTCTTCGG CCTGGTCGAT GCCATTCTCA ACGGCGAGGC TGCGCATGCC CTGCGTATGC TCGAAGGCTT GCGCGGTGAA GGTGTGGAGC CGCCAGTCAT CCTCTGGGCC TTGGCCCGTG AGCTGCGCCA ACTGGCGGGG CTAGCCCAGC AGTTCAGCCA AGGCGTGCCA TTGGACAAAG CGTTCAGCCA GGCCCGCCCG CCCATCTGGG ACAAACGCCG ACCGCTGGTC AGCAAGGCCC TGCAGCGCCT CTCGGCGCAG CGTTGGGCGC AACTGCTGCA GGATGCCCAG CGAATCGATG CGCAGATCAA AGGGCAGGCT GAAGGTTCGC CGTGGATTGG CCTGGCGCGG CTGTCGCTGT TGATGGCTGG CCAGCGCCTG GCCCTCCCTC CCGAGTAA
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Protein sequence | MKLAPAQLNK HLQGALAPVY VVSGDDPLLC QEAADAIRNA ARQQGFDERQ VFSADANFDW GTLLQAGASL SLFAQRRLLE LRLPSGKPGD KGAAALMEYC ANPAEDTLLL ISLPKLDSSA QKTKWGKALI EGAHCQFIQI WPVDVHQLPQ WINQRLQQAG LSAQRDAVDL IAARVEGNLL AAAQEIEKLK LLAEGSQITV ETVQAAVADS ARFDVFGLVD AILNGEAAHA LRMLEGLRGE GVEPPVILWA LARELRQLAG LAQQFSQGVP LDKAFSQARP PIWDKRRPLV SKALQRLSAQ RWAQLLQDAQ RIDAQIKGQA EGSPWIGLAR LSLLMAGQRL ALPPE
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