| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4784 |
|---|
| Symbol | hemL |
|---|
| ID | 1042981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 5446494 |
|---|
| End bp | 5447777 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637148185 |
|---|
| Product | glutamate-1-semialdehyde aminotransferase |
|---|
| Protein accession | NP_746889 |
|---|
| Protein GI | 26991464 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0001] Glutamate-1-semialdehyde aminotransferase |
|---|
| TIGRFAM ID | [TIGR00713] glutamate-1-semialdehyde-2,1-aminomutase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0445996 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCGTT CCGAAGCCCT GTTCGCCCAA GCCCAGAAGC ACATCCCTGG CGGTGTCAAC
TCGCCGGTCC GCGCTTTCAA GAGCGTTGGC GGCACGCCGC TGTTCTTCAA GCATGCCGAA
GGCGCCTATG TCGTTGACGA GGACGACAAA CGCTACGTCG ACTACGTCGG CTCGTGGGGC
CCGATGATCC TCGGCCACGG CCACCCGGAC GTGCTGGACT CGGTACGCAG GCAGCTGGAG
CACGGCCTGT CCTACGGCGC GCCGACCGCC ATGGAAACCG AGATGGCCGA CCTGGTCTGC
TCGATCGTAC CGTCGATGGA AATGGTGCGC ATGGTCAGCT CGGGCACTGA AGCCACCATG
AGCGCCATCC GTCTGGCCCG TGGCTACACT GGCCGTGACG CCATCATCAA GTTCGAAGGC
TGCTACCACG GCCACTCCGA CAGCCTGCTG GTAAAAGCCG GCTCGGGCTT GCTGACCCAA
GGCGTGCCAA GCTCGGCAGG CGTGCCAGCG GACTTCGCCA AGCACACCCT GACCCTGCCG
TTCAACGACA TCGCCGCCGT CGAGAAGACC CTGGCCGAAG TTGGCCAGAC CGTGGCCTGC
ATCATCGTGG AGCCAGTGGC CGGCAACATG AACTGCGTAC CACCAGCACC GGGCTTCCTC
GAGGGCCTGC GCGAGCAATG CGACAAGCAT GGCGTGGTGC TGATCTTCGA CGAAGTGATG
ACCGGTTTCC GCGTCTCGCT CGGCGGCGCC CAGGGCCATT ACGGCATCAA GCCGGACCTG
TCGACCTTCG GCAAGATCGT CGGTGGCGGC ATGCCGGTCG GCTGTTTCGG CGGCAAGCGT
GAAATCATGG GCTGCATCGC CCCGCTCGGC CCGGTCTACC AGGCCGGCAC CCTGTCGGGC
AACCCGCTGG CCATGGCCGC CGGCCTGACC ACCCTCAAGC TGATCAGCCG CCCAGGCTTC
CACGCCGAGC TGACCGACTA CACCAGCCGC ATGCTTGACG GCCTGCAGCA ACGCGCCGAT
GCCGCTGGCG TGCCATTCGT CACCACCCAG GCCGGTGCCA TGTTCGGCCT GTACTTCAGC
GGCGCCGACG ATATCGTCAC CTTCGAAGAC GTGATGGCCA GCGATGCCGA GCGCTTCAAG
CGCTTCTTCC ACCTGATGCT CGACGGTGGC GTGTACCTGG CACCGAGCGC ATTCGAAGCG
GGCTTCACCT CCATCGCCCA TGGCGACAAG GAGCTGCAGA TCACCCTGGA TGCGGCTGAG
AAAGCCTTTG CTGCCCTGAA GTGA
|
|---|
| Protein sequence | MSRSEALFAQ AQKHIPGGVN SPVRAFKSVG GTPLFFKHAE GAYVVDEDDK RYVDYVGSWG
PMILGHGHPD VLDSVRRQLE HGLSYGAPTA METEMADLVC SIVPSMEMVR MVSSGTEATM
SAIRLARGYT GRDAIIKFEG CYHGHSDSLL VKAGSGLLTQ GVPSSAGVPA DFAKHTLTLP
FNDIAAVEKT LAEVGQTVAC IIVEPVAGNM NCVPPAPGFL EGLREQCDKH GVVLIFDEVM
TGFRVSLGGA QGHYGIKPDL STFGKIVGGG MPVGCFGGKR EIMGCIAPLG PVYQAGTLSG
NPLAMAAGLT TLKLISRPGF HAELTDYTSR MLDGLQQRAD AAGVPFVTTQ AGAMFGLYFS
GADDIVTFED VMASDAERFK RFFHLMLDGG VYLAPSAFEA GFTSIAHGDK ELQITLDAAE
KAFAALK
|
|---|
| |