| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4772 |
|---|
| Symbol | hrpB |
|---|
| ID | 1042828 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 5432733 |
|---|
| End bp | 5435261 |
|---|
| Gene Length | 2529 bp |
|---|
| Protein Length | 842 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637148174 |
|---|
| Product | ATP-dependent helicase HrpB |
|---|
| Protein accession | NP_746878 |
|---|
| Protein GI | 26991453 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1643] HrpA-like helicases |
|---|
| TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0178797 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTCAT TACCCATTGA TGCTGCCTTG CCCGCCCTGC GCCAAGCTCT GGAAAACCGT
GACGAAGTGG TGCTTGAAGC GCCGCCTGGC GCTGGCAAGA CCACCCGCGT GCCACTGGCG
CTGCTGCACG AACCGTGGCT GGCCGGGCAG AGCATCCTAA TGCTCGAGCC ACGGCGCCTG
GCTGCGCGGG CAGCGGCCGA ACGGCTGGCC AGTGAGCTGG GCGAGCAGGT TGGGGAAACG
GTGGGTTACC GCATCCGTCT GGACAGCAAG GTCGGGCCGA AAACCCGTAT CGAAGTGGTG
ACCGAAGGCA TCCTCACACG CCGCCTGCAA GCCGACCCGG CGCTGGAAGG TGTGGGCCTG
CTGATCTTCG ACGAATTTCA CGAGCGCAGC CTGGATGCCG ATCTCGCACT TGCGCTGAGC
CTTAACGGCC GCGAGTTGCT GCGTGACGAC CCGCCACTGA AGATTCTGCT GATGTCCGCG
ACCCTGGAAG GCGAACGCCT GTCGCGGTTG CTGGACGATG CCCCGGTGGT CAGCAGCGAA
GGCCGCATGC ATCCGGTGGA TATCCGCTGG GGGCGGCCGT TCCAGCCAGG CGAGTTCATT
GAGCCACGGG TGGTGGACTG CGTGTTGCAT GCGCTGGCTG ACCAGGCCGG CAGCGTGCTG
GTGTTCCTGC CTGGGCAAGC CGAGATCCGC CGGGTTCACC AAAGCCTTCA GGAGGTACTG
GGCGCGCGCC CCGAGATTCT GCTGTGCCCG CTGCATGGCG AGCTCGACCT CAATGCCCAG
CGCGCCGCTA TCGACCCGCC GGCCAAGGGG TTGCGCAAGG TGGTGCTGGC CACCAACATC
GCTGAGACCA GCCTGACCAT CGATGGCGTG CGCGTGGTGA TCGACGCAGG CCTGGCCCGG
GTGCCGCGCT TCGACCCCGG CAGCGGCATG ACCCGCCTGG ACACCCAGCG CATTTCCCGC
GCCAGTGCCA CCCAGCGCGC TGGGCGTGCC GGCCGCCTGG AACCCGGCGT GTGCTACCGC
CTTTGGTCCG AGGCCCAGCA TGACCAGCTG GCCGCCCATG GCAGTGCCGA GATTCTCCAG
GCCGACCTGG CCGGGCTGGC CCTGCAGTTG GCGCGCTGGG GTGTAACCCC CGAGCAGTTG
CGCTGGCTCG ACCAGCCGCC AGCTGCAGCG TACGCCCAGG CACAGGACCT GTTGGCGCGA
CTCAGCGCCT TCCGGCCGGG CAGCCGCGAC ACCCTCAGCG AACATGGCCA GGCCATGGCC
GAACTGCCGG CTCACCCACG CATCGCGCAC TTGTTGCTGC GGGGTCAGGA TCTGGGCCTG
GCACAGATGG CCTGCGATGT GGCTGCACTG CTGGGGGAGC GGGACATCCA GCGTGGCGGT
GGTGCCGACT TGCACAGCCG GCTTGCGCTG GTCAGCGGTG AGAGCAAGGC AGCGCGTGGC
GGCCAGGGTG GTGTGCAGCG TGCTCGTCAG CTGGCCCGGC AATACCGTGG CCTGTTGCGT
GGCAAGGTCG GTGCGCCGGT CGCCGACCCG GACCACCCAC GCTGGCTGGG CGCCCTGCTG
GCGCTGGCCT ACCCTGACCG GGTCGCCCAG CAGCGCCGGG CGGGTGGGGC GGAGTATCGG
CTGGCCAACG GCCGTGCGGC CCTGTTTGGC GAAGTCGATG CATTGATGAA GTGCCCATGG
CTGGTGATCG CCGACCTGGG TAGCCGCCAG GGGCAGCGTG AGGAGCGGAT CTATCTGGCA
GCCGAATTCG ATCCGGCGTT GCTTGAGGGG GTACTGGCCG AGCAGGTCGA GCGGGTCGAT
ATCCTCGATT GGGACGAGCG CGAGCAGGTG TTGCGCGCCG AGCGTCAGGT GAAGGTTGGC
GAACTGGTCC TCAGCCGCGA GCCGCTGCCT GGGCTGGATG ATGAAGCCAG GACCCGGGCG
CTGCTTGGCC TGGTCCGGCG CAAAGGTTTG AACCTGCTGA CCTGGACGCC GGAACTGCGG
CAATGGCAGG CACGTGTGGC GCTGCTGCGT CAGCTCGACC TGCAGAAGGA TGGCCACAGC
GAATGGCCTG ACCTGGGGGA CGAAGCCCTG CTGGCCAGCC TGGAAGACTG GTTACAGCCT
TACCTGAGCA AAGTATCGCG CCTCAGCCAC TTTGCCGCGC TGGACTTGCC GTCGATGCTG
CGCAACCTGC TGCCCTGGCC GCTGCCGCAA CGCCTGGAAG AACAGGCCCC GGCGCATTTG
GCCGTGCCGT CCGGCTCGAA CATCCGCCTG GATTACAGCG AAACCCCGCC GATTCTTGCC
GTGCGTCTGC AAGAACTGTT CGGCCTTGCC GACACCCCGC GCATCGCCAA TGGCCGGCAG
CAGGTCAAGC TGCACCTGCT GTCACCGGCG CGTCGGCCGG TGCAGGTGAC CCAGGACCTG
GCCAGTTTCT GGCGCACGAC CTATGCCGAG GTGAAGAAAG ACCTGAAAGG GCGATATCCG
AAGCACTACT GGCCGGACGA CCCTCTGGTG GCCGAGGCTA CCGCCAGGGC CAAGCCGAGA
GGGAGCTGA
|
|---|
| Protein sequence | MISLPIDAAL PALRQALENR DEVVLEAPPG AGKTTRVPLA LLHEPWLAGQ SILMLEPRRL
AARAAAERLA SELGEQVGET VGYRIRLDSK VGPKTRIEVV TEGILTRRLQ ADPALEGVGL
LIFDEFHERS LDADLALALS LNGRELLRDD PPLKILLMSA TLEGERLSRL LDDAPVVSSE
GRMHPVDIRW GRPFQPGEFI EPRVVDCVLH ALADQAGSVL VFLPGQAEIR RVHQSLQEVL
GARPEILLCP LHGELDLNAQ RAAIDPPAKG LRKVVLATNI AETSLTIDGV RVVIDAGLAR
VPRFDPGSGM TRLDTQRISR ASATQRAGRA GRLEPGVCYR LWSEAQHDQL AAHGSAEILQ
ADLAGLALQL ARWGVTPEQL RWLDQPPAAA YAQAQDLLAR LSAFRPGSRD TLSEHGQAMA
ELPAHPRIAH LLLRGQDLGL AQMACDVAAL LGERDIQRGG GADLHSRLAL VSGESKAARG
GQGGVQRARQ LARQYRGLLR GKVGAPVADP DHPRWLGALL ALAYPDRVAQ QRRAGGAEYR
LANGRAALFG EVDALMKCPW LVIADLGSRQ GQREERIYLA AEFDPALLEG VLAEQVERVD
ILDWDEREQV LRAERQVKVG ELVLSREPLP GLDDEARTRA LLGLVRRKGL NLLTWTPELR
QWQARVALLR QLDLQKDGHS EWPDLGDEAL LASLEDWLQP YLSKVSRLSH FAALDLPSML
RNLLPWPLPQ RLEEQAPAHL AVPSGSNIRL DYSETPPILA VRLQELFGLA DTPRIANGRQ
QVKLHLLSPA RRPVQVTQDL ASFWRTTYAE VKKDLKGRYP KHYWPDDPLV AEATARAKPR
GS
|
|---|
| |