| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4755 |
|---|
| Symbol | |
|---|
| ID | 1041681 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 5411774 |
|---|
| End bp | 5414167 |
|---|
| Gene Length | 2394 bp |
|---|
| Protein Length | 797 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637148157 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | NP_746861 |
|---|
| Protein GI | 26991436 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.251254 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00353592 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTTA CCCCGGTTCC ACAGCGCCAC CCCTTGAGTC GTGCCCTGCA TGCTGCACTG
TTGGGCCTGG CAGTCAGCAC CTACGCACTG CCGTCGCTTG CACAGCCTTT GAACGCTGAT
CACAACAACC CGCTCAAGCA GTGGAGCATT CCCGCGGGCC CGCTGGCGCC GGCACTGGAC
CGCTTTGCGC GCGAGGCGGG TATCAGCCTT TCGTTCGATG CGCAGAACGT GGCCAACCGC
AATACCAACG GGGTGCAAGG CGCGCTGGAT ACACGGTCGG CACTGTCGTC GCTGCTGCGC
GGAACCGAGT TGCAGATTGA GCCGCAGGGC CCCAATGCGT ACCTGGTGAT TCCACAACCA
AAGCCTGCCG GCCCGCTGGA GCTGGGCGTG ACCGAGGACT ACCGCCTGGC ACCTGTCATC
ATCAATGCCA AGGTCAAGGC CAGCGCCGAC GATGACGCCA ACTCGGTGGT TGCCAAGGAG
CTGTGGGTAG GGGGCAAGGT GGCGACCAGC ATCCTCAACA CGCCCGCGTC CGTGTCGGTG
GTGACCAACA AGGAAATGCA GCAGCGCAGC GTCAGCACCA CCGAAGAGGC GCTGCAGTAC
ACCCCCGGCG TGGTCAGCGA CTACTACGGT TCGGACGACC GCAACGACTA CTTCCTGATC
CGCGGCTTCC AGGCCACCAC CTACCGAGAC GGCCTGACCC TCAGCTCGAT GCGCGGTGTG
CGCGAAGACC CTTACGCCTA CGAGCGTATC GAAATTCTGC GGGGTGCCAA CTCCACCCTG
TTCGGCCCGG CAGACCCGGG TGGGTCGGTC AACTTCGTGA CCAAGCAACC GCGCTTCGAG
AAGTTTGGCC AAGGCTACGT GACCTACGGC TCCTATGACC ATGCCGAAAC CGGGATTGAT
GTAGGCGATG CGCTGAACGA CGAACAAACC CTGGCCGGCC GCTTCACGGC CAAGATGCAG
AACAGCGACC GCGAGTACGA CCATTCGCAG GACGATAACC GCTTCGTGAT GGGCGGCCTG
ACCTGGGCGC CGACCGACTT CACCTCGGCC ACGGTGGTGC TGGATTACCT GAAGACCAAC
AGCTCGCCGA ACAGCGGTGG CTACCCGCTG GACAAGGGGT ACGACCGCAG CGACTTCTAC
GGCGAGCCCG GCTACAACTT CCACGATGTC GAGCGCACCA GCCTGAGCGG CAACATTACC
CACGACTTCG ACAACGGCTT CACCCTGCGC AGCAACCTGC GCTACAGCGA GCTGACCGAT
GACTTCGGCT ATGTCTACCT GAGCGACAAC GCCTCGCGTG TTGGCACCAC CATTCCACGC
TACGTCTTCG GCACCGACAG CGATGCCGAC CAGCTCAATG GCAACTTGAT GCTGCAGTAC
GATGCGCAGT TCGAGCACAT CGACAGCAGC ACGTTGGTGG GCGTCGAGTA CCTCGACTCG
ACGACCAAAC AGAGCTCGGT CTACAGCCTG GCGCCCTCCA TCGACATCGC CAACCCGGTA
TTCACTGGCG TGCCCGGCGG CATCACGCCC TATACCCGCA AAAAGAATGA CGCCACCACC
AAGGCGGTTT TCCTGCAGCA GAACCTGTCG TTCTTTGACC GCGTCATCGC GACCGCAGGC
GTGCGTAACG ACTCGATGGA CCTGTCGAGC AAGGAATACA TCGGTGGCGA GCAGACGGAA
AAGGACAACT TCTCCGAAAC CTCCTACCGC GCGGCACTGA CCTATATCGT CAACGATGAA
GTGTCGACCT ACGTGAGCAT GGTGGAGTCC GTCTCGCCGC CGCAAGTGGG CGTTACCCCG
CAGACCGGCA AGCAATACGA AGTGGGCATC AAGTATTCGC CCATGGGCAT GGACGCACTC
TTCTCCGCCG CTGTTTACGA CCTGACCCAA GAGAACGTCA CCATTGCCGT GGTGTTGCCA
AGCGGCATCA TCGAGCAGCA GACGGTGGGC GAGTCACGCG TGCGTGGCCT TGACCTGGAA
GCCAAGGCAC AAGTCACGCA AGACATCAGC GTGATTGGTG CTTACTCCTA CATGGAGTCC
GAGGTGCTGC GCGGGTCGCT GTATGACGGC TCTTCCTTGA AGGGTAATGA GTTCACCACT
GCGCCCAAAC ACACCGCATC GCTGTGGAGC TACTACGACA TACCTGGCAC TGACGTGAGC
GTCGGCCTGG GCGCGCGGTA TGTGGGGGCG TACTACATGG ATGCTGCCAA TACCAAGAAG
AGCGATGGGA CCACGTTGTT TGATGCGGCG CTGAACTACA AGATCGCCAA AGGGACCGAC
CTGGCGCTGA ATGTGAGCAA CCTGTTTGAC GAGCAGCATG TGGTGGGGTC GGGGACGGCG
AATTACTACA ACCCGGGGCG GGAGGTGACG GCGAAGGTGA GTTATAGCTG GTAA
|
|---|
| Protein sequence | MSFTPVPQRH PLSRALHAAL LGLAVSTYAL PSLAQPLNAD HNNPLKQWSI PAGPLAPALD
RFAREAGISL SFDAQNVANR NTNGVQGALD TRSALSSLLR GTELQIEPQG PNAYLVIPQP
KPAGPLELGV TEDYRLAPVI INAKVKASAD DDANSVVAKE LWVGGKVATS ILNTPASVSV
VTNKEMQQRS VSTTEEALQY TPGVVSDYYG SDDRNDYFLI RGFQATTYRD GLTLSSMRGV
REDPYAYERI EILRGANSTL FGPADPGGSV NFVTKQPRFE KFGQGYVTYG SYDHAETGID
VGDALNDEQT LAGRFTAKMQ NSDREYDHSQ DDNRFVMGGL TWAPTDFTSA TVVLDYLKTN
SSPNSGGYPL DKGYDRSDFY GEPGYNFHDV ERTSLSGNIT HDFDNGFTLR SNLRYSELTD
DFGYVYLSDN ASRVGTTIPR YVFGTDSDAD QLNGNLMLQY DAQFEHIDSS TLVGVEYLDS
TTKQSSVYSL APSIDIANPV FTGVPGGITP YTRKKNDATT KAVFLQQNLS FFDRVIATAG
VRNDSMDLSS KEYIGGEQTE KDNFSETSYR AALTYIVNDE VSTYVSMVES VSPPQVGVTP
QTGKQYEVGI KYSPMGMDAL FSAAVYDLTQ ENVTIAVVLP SGIIEQQTVG ESRVRGLDLE
AKAQVTQDIS VIGAYSYMES EVLRGSLYDG SSLKGNEFTT APKHTASLWS YYDIPGTDVS
VGLGARYVGA YYMDAANTKK SDGTTLFDAA LNYKIAKGTD LALNVSNLFD EQHVVGSGTA
NYYNPGREVT AKVSYSW
|
|---|
| |