Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_4740 |
Symbol | hsdR |
ID | 1043007 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 5393057 |
End bp | 5395420 |
Gene Length | 2364 bp |
Protein Length | 787 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637148144 |
Product | type I restriction-modification system, R subunit |
Protein accession | NP_746848 |
Protein GI | 26991423 |
COG category | [V] Defense mechanisms |
COG ID | [COG4096] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00141278 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGACAAGA AATCACTTTC CGAGCGGGAC ATCTGCAGCA AATACATCGC TCCAGCCATC CAGCACGCTG GGTGGGACAT GCACAAACAG GTGCGTGAAG AGGTCAGCTT CACCAAAGGC CGGATTATGG TCCGTGGCAA GCTTCACAGC CGGGGCGAAG CACGCCGTGC AGACTTCATC CTCTACCACC AAGCCAACCT GCCTATCGCT GTGATCGAGG CGAAGGATAA CAAGCACTCC GTTGGCTCCG GCATGCAGCA AGCGCTTGGC TATGCAGAGG CGTTGGATGT GCCGTTCGTG TTCTCCAGCA ATGGCGATGG TTTTCTCTTT CATGATCGCA GTGGGACAGA CAGCAAGGTC GAAACTGAAC TCTCCTTGGA TCAGTTCCCT AGTCCTGCCG AACTTTGGCA CCGCTACTGC CAATGGAAGG GGTTGGACAA TGCTGTTCAA CACAAGATAG AAGCGCCCTA CTACGACGAC GGCTCCGGAC GTATGCCGCG CTATTACCAA ATGAACGCCA TCAACCGCAC CGTTGAGGCG GTAGCGCGCG GGCAAGACCG CGTTCTGCTG GTAATGGCAA CTGGCACCGG AAAAACCTAC ACCGCCTTTC AAATCATCTG GCGACTGTGG AAATCGAAAC AGAAAAAAAG AATCCTGTTC CTTGCCGACC GCAACATCCT GGTCGACCAG ACAAAGAACA ACGACTTTAA GCCCTTCGGC CAGGCGATGA CCAAAATCGC CAGACGCCAG ATAGACACCT CCTACGAAAT CTACCTGTCG CTCTATCAGG CGGTGACTGG TGCTGAAGAA GAGATGAACG TCTACAAGCA GTTCTCCCGC GACTTCTTCG ACTTGATCGT GATCGACGAA TGCCACCGTG GCAGCGCCGC CGAGGACTCC GCCTGGCGCG AGATTCTTGG CTACTTCTCC AACGCCACCC ATGTCGGCCT CACCGCAACA CCGAAGGAAA CCAAAGAGGT GTCCAGCATC ACCTACTTCG GTGAGCCGGT GTACAGCTAC ACCCTCAAAC AGGGCATCGA GGACGGTTTT CTCGCGCCCT ATAAAGTGGT GCGGATCGAC TTCGACAAAG ACCTACAAGG CTGGCGCCCC CCCAAGGGTA TGCTCGACAA GAATGGCGAG CTGATCGAAG ACCGCATCTA CAACCTCAAG GACATGGATC GCACTCTGGT CATCGAAACG CGCACCCAAC TGGTGGCGCA GAAGGTCACC GAGTTCCTCA AGGCCTCCGA CCCGTTCCAG AAAACCATCG TCTTCTGCGA CGATATCAAT CACGCCGAGC GTATGCGCCA GGCCTTGGTC AACCTGAACC CCGAGCGCGT GGCTGAGAAC CGCAAGTACG TCATGCGCAT CACCGGCGAT GATCAGGAAG GCAAGGCCGA GCTGGATAAC TTCATCAACC CGGAAGAGCG CTACCCGGTC ATCGCCACCA CCAGCAAGCT GATGACCACC GGTGTCGATG CGCAGACTTG CAAGCTGATC GTGCTCGACC AGCACATCAA GTCGATGACC GAGTTCAAGC AGATCATCGG CCGTGGCACC CGCATCAATG AAGATTTCGG CAAATACTGG TTCACCATTA TGGACTTCAA GAAGGCCACC GAGCTTTTTG CCGACCCAGC TTTCGACGGA GACCCAGTGG TGGTCTACGC CCCCGAAGGC AACGAGCTAC CAGTCCCGCC CGACGATTTA CTTGAAGGCG ATGGCATCAG CGCAGGGAGT GATGGAGAAA GCGATGATTT GGATTTTACC GGCGAGGAAG ACGGCAAGAA GCTCATCAAA TACGTCATCG ACAGCATCCC GATCTATGTC ATCGCCGAGC GTGTCCAGTA CTACGGGCCG GATGGCCGAC TGATCACCGA ATCGCTGCAC GACTACACCC GTACCTGCGT GCAAAAACAG TTCGCCTCGC TGGACGACTT TCTGCGCCAT TGGAGTGATG CCGAGCAGAA AAAGGTCATC ATCGACGAAA TGGCAGCCCA AGGCGTGATG TGGGAAGCCC TGGCCGAAGA AGTGGAAAAG AAACAGGGCA AGCCACTCGA TCCGTTTGAC TTGATCTGCC ACGTCGCGTT CGACCAACCG CCGCTGTCGC GTAAAGAACG CGCCGAACAA GTGAAAAAGC GTAACTACTT CGCCAAATAC TCCGGTGCAG CGCGCCAGGT GCTGGAAGCG CTGCTGGATA AATACGCCGA CACCGGCATT GAGCACATCG AGGACATCAA AATCCTCCAG CTCGATCCCT TTAACCAGCT CGGTGCACCC ATCGAACTGG TTAAAGCCTT TGGCGGCAAA GCTGGCTACA ACAAAGCTAT CCATGAACTG GAAGACGCGC TGTACGCCAG TTAA
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Protein sequence | MDKKSLSERD ICSKYIAPAI QHAGWDMHKQ VREEVSFTKG RIMVRGKLHS RGEARRADFI LYHQANLPIA VIEAKDNKHS VGSGMQQALG YAEALDVPFV FSSNGDGFLF HDRSGTDSKV ETELSLDQFP SPAELWHRYC QWKGLDNAVQ HKIEAPYYDD GSGRMPRYYQ MNAINRTVEA VARGQDRVLL VMATGTGKTY TAFQIIWRLW KSKQKKRILF LADRNILVDQ TKNNDFKPFG QAMTKIARRQ IDTSYEIYLS LYQAVTGAEE EMNVYKQFSR DFFDLIVIDE CHRGSAAEDS AWREILGYFS NATHVGLTAT PKETKEVSSI TYFGEPVYSY TLKQGIEDGF LAPYKVVRID FDKDLQGWRP PKGMLDKNGE LIEDRIYNLK DMDRTLVIET RTQLVAQKVT EFLKASDPFQ KTIVFCDDIN HAERMRQALV NLNPERVAEN RKYVMRITGD DQEGKAELDN FINPEERYPV IATTSKLMTT GVDAQTCKLI VLDQHIKSMT EFKQIIGRGT RINEDFGKYW FTIMDFKKAT ELFADPAFDG DPVVVYAPEG NELPVPPDDL LEGDGISAGS DGESDDLDFT GEEDGKKLIK YVIDSIPIYV IAERVQYYGP DGRLITESLH DYTRTCVQKQ FASLDDFLRH WSDAEQKKVI IDEMAAQGVM WEALAEEVEK KQGKPLDPFD LICHVAFDQP PLSRKERAEQ VKKRNYFAKY SGAARQVLEA LLDKYADTGI EHIEDIKILQ LDPFNQLGAP IELVKAFGGK AGYNKAIHEL EDALYAS
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