| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4733 |
|---|
| Symbol | smpB |
|---|
| ID | 1042980 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 5381896 |
|---|
| End bp | 5382378 |
|---|
| Gene Length | 483 bp |
|---|
| Protein Length | 160 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637148137 |
|---|
| Product | SsrA-binding protein |
|---|
| Protein accession | NP_746841 |
|---|
| Protein GI | 26991416 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0691] tmRNA-binding protein |
|---|
| TIGRFAM ID | [TIGR00086] SsrA-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.348384 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00889462 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAGC AAAAAAAACA TCCGACCGGG ACCATCGCGC AAAACAAGAA AGCGCGACAC
GATTACTTCA TCGAACACAA GTTCGAGGCC GGGCTGGTCC TGTCCGGCTG GGAAGTAAAA
AGCCTGCGAG CCGGCAAGGC GCACCTGACT GACAGCTACG TGCTGCTCAA GGACGGTGAG
GCCTGGCTGT TCGGCAGCCA CATCACCCCG CTGACCACGG CCAGCACCCA CGTCATCGCC
GACCCTACAC GCACCCGCAA GCTGCTGCTG AACAAGCGCG AGCTCGAGCG CGTGGAAGCG
GCCGTGGCGC AAAAAGGCTA CACCTGTGTG GCTTTGGCGC TGTACTGGAG CAAGCACCTG
ATCAAGTGCG AAATCGCACT GGGCAAGGGC AAGAAGGAAT TCGACAAGCG CGACACCATG
CGCGAACGCG ATTCCAACCG CGAGCTGCAG CGGGCTGTGC GGAACAAGGG CAAGGAAGAG
TAA
|
|---|
| Protein sequence | MAKQKKHPTG TIAQNKKARH DYFIEHKFEA GLVLSGWEVK SLRAGKAHLT DSYVLLKDGE
AWLFGSHITP LTTASTHVIA DPTRTRKLLL NKRELERVEA AVAQKGYTCV ALALYWSKHL
IKCEIALGKG KKEFDKRDTM RERDSNRELQ RAVRNKGKEE
|
|---|
| |