Gene PP_4683 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_4683 
SymbolmrcB 
ID1044197 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp5320928 
End bp5323249 
Gene Length2322 bp 
Protein Length773 aa 
Translation table11 
GC content63% 
IMG OID637148086 
Productpenicillin-binding protein 1B 
Protein accessionNP_746792 
Protein GI26991367 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02071] penicillin-binding protein 1B 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000305505 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCCGAA CCCGAAATCC CCGCACCCCT CAGAAACGCC CGACCGGCCG CTCCCGCGCC 
TGGCTGGGCT GGGCTTTGAA GCTCAGCCTG GTTGGCCTGG TGATCGTTGC CGGCTTCGCG
GTTTACCTCG ATGCCGTCGT CCAGGAAAAG TTCTCCGGCA AGCGCTGGAC CATCCCGGCC
AAAGTGTATG CCCGACCGCT GGAGCTGTTC ACCGGCCAGA AGTTGAGCAA GAACGACTTC
CTCACCGAGC TCGATGCGCT CGGCTACCGT CGCGAAAGCG CGGCCAACGG CCCGGGCGCT
GCGTCCGTCA ACGGCAATAC CGTCGACCTC AATACCCGTG GCTTCCAGTT CTACGAGGGC
ATGGAACCGG CGCAGTTCGT CCGCGTGCGC TTCTCTGGCG ATTACGTTGC GGGCCTTTCC
GGTGCCAACG GCAAGGCGCT TGACGTGGTG CGGCTGGAGC CGCTGATGAT CGGCGGCATC
TACCCGAAAA ATCTCGAAGA CCGCATCCTG ATCAAGATCG ATCAGGTACC CAAATATCTG
CTCGAAACCT TGGTGGCAAC GGAGGACCGC GAGTTCTACA GCCACTTCGG CGTGTCGCCA
AAGTCCATCG TCCGGGCCAT GTGGGTCAAC ACGTCGTCCG GCTCGATGCG CCAGGGTGGC
AGTACCCTGA CCCAGCAGTT GGTGAAGAAC TTCTACCTCA GCAGCGAGCG CAGCCTCAGC
CGCAAGCTGA CCGAGGCGAT GATGGCGGTC CTGCTCGAAC TGCACTACGA CAAACGCGAA
ATCCTTGAGG CCTACCTCAA CGAGGTGTTC GTCGGCCAGG ACGGTCAGCG CGCGGTGCAC
GGCTTTGGTC TGGCTAGCCA GTTCTTCTTC AGCCAGCCGC TGTCCGAGCT GAAACTGCAT
CAGATCGCCC TGCTGGTAGG CATGGTCAAA GGCCCGTCCT ACTACAACCC GCGGCGTCAC
CCCGAGCGGG CCCTGGCTCG CCGCAACCTG GTGCTCGACC TGGTGGCCGA GCAGGGCGTG
GCCAGCCAGG CAGAAGTCGA TGCGGCGAAG AAAATGCCGC TGGGCGTGAC CAAGCGTGGC
AGCCTGGCCG ACAGCTCGTT CCCAGCCTTC CTCGACCTGG TCAAGCGACA GTTGCGCCAG
GATTACCGCG ACGAGGACTT GACCGAAGAA GGCCTGCGCA TCTTTACCAG CTTCGACCCT
ATCCTGCAGA TGAAGGCCGA AACCTCGATG AGCGAGACCT TCAAGCGCCT GGCGGGCCGC
AAGGGGGCAG ACGATGTGGA AGCGGCGATG GTCGTGACCA ACCCTGAGAC CGGTGAAGTA
CAGGCGCTGA TCGGTAGCCG CCAGGCAGGC TTCGCCGGCT TCAACCGGGC CATCGATGCT
GTGCGGCCGA TCGGCTCGTT GGTCAAGCCG TCGGTATACC TGACTGCGCT GGAGCAGCCG
AGCAAGTACA CCCTGACCAG TTGGGTGCAG GACGAGCCAT TTTCGGTCAA GGGCGCTGAC
GGCCAAGTCT GGCGCCCGCA AAACTATGAC CGCCGCCCGC ATGGCACGAT CTACCTGTAC
CAGGGGCTGG CCAACTCCTA CAACCTGTCG ACCGCCAAGC TCGGCCTGGA AGTGGGTGTG
CCGAACGTGA TCAAGACCAT CGGTCGCTTG GGCGTGAATG TCGACTGGCC TGCATTCCCG
GCCATGTTGC TGGGGGCAGG TGGCATGTCG CCGATGCAGG TGGCAACCAT GTACCAGACC
ATCGCCAACG GTGGCTTCAA CACGCCGATG CGCGGCATCC GCAGCGTGCT CACCGCCGAG
GGCGAGCCGC TCAAGCGCTA CCCGTTCCAG ATCCAGCAAA CCTTCGACCC AGGTGCCATT
TACCTGGTGC AGAACGCCAT GCAACGCGTA ATGCGCGAAG GTACAGGGCG CTCGGTGTAC
AACACCTTGC CACGCTCGCT GACCCTGGCG GGCAAGACCG GTACCAGTAA CGACTCGCGT
GACAGCTGGT TCTCCGGCTT CAGTCAGGAT CTGCTGGCCG TGGTGTGGAT GGGGCGTGAC
GATAACGGCA AGACACCGTT TACCGGCGCC ACCGGCGCCT TGCAGGTGTG GACCAGCTTC
ATGAAGAAGG CCGACCCGCT GCCGCTGGAC ATGCCGCAAC CGGATAACGT GGTGCAGGCC
TGGATCGACC CCTACAGTGG CCATGGGTCT GATGCCAGCT GTCCGGGAGC GGTGCAGATG
CCGTATATTC GCGGGAGCGA ACCGCCGGCC GGCGCAGCCT GTGGCGGCGA GCAGGACCCA
GTAGAATCGG TAATGGACTG GGTCAAAGGC TGGATGAATT AA
 
Protein sequence
MTRTRNPRTP QKRPTGRSRA WLGWALKLSL VGLVIVAGFA VYLDAVVQEK FSGKRWTIPA 
KVYARPLELF TGQKLSKNDF LTELDALGYR RESAANGPGA ASVNGNTVDL NTRGFQFYEG
MEPAQFVRVR FSGDYVAGLS GANGKALDVV RLEPLMIGGI YPKNLEDRIL IKIDQVPKYL
LETLVATEDR EFYSHFGVSP KSIVRAMWVN TSSGSMRQGG STLTQQLVKN FYLSSERSLS
RKLTEAMMAV LLELHYDKRE ILEAYLNEVF VGQDGQRAVH GFGLASQFFF SQPLSELKLH
QIALLVGMVK GPSYYNPRRH PERALARRNL VLDLVAEQGV ASQAEVDAAK KMPLGVTKRG
SLADSSFPAF LDLVKRQLRQ DYRDEDLTEE GLRIFTSFDP ILQMKAETSM SETFKRLAGR
KGADDVEAAM VVTNPETGEV QALIGSRQAG FAGFNRAIDA VRPIGSLVKP SVYLTALEQP
SKYTLTSWVQ DEPFSVKGAD GQVWRPQNYD RRPHGTIYLY QGLANSYNLS TAKLGLEVGV
PNVIKTIGRL GVNVDWPAFP AMLLGAGGMS PMQVATMYQT IANGGFNTPM RGIRSVLTAE
GEPLKRYPFQ IQQTFDPGAI YLVQNAMQRV MREGTGRSVY NTLPRSLTLA GKTGTSNDSR
DSWFSGFSQD LLAVVWMGRD DNGKTPFTGA TGALQVWTSF MKKADPLPLD MPQPDNVVQA
WIDPYSGHGS DASCPGAVQM PYIRGSEPPA GAACGGEQDP VESVMDWVKG WMN