| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4644 |
|---|
| Symbol | radA |
|---|
| ID | 1041864 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 5268966 |
|---|
| End bp | 5270336 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637148042 |
|---|
| Product | DNA repair protein RadA |
|---|
| Protein accession | NP_746753 |
|---|
| Protein GI | 26991328 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1066] Predicted ATP-dependent serine protease |
|---|
| TIGRFAM ID | [TIGR00416] DNA repair protein RadA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.592741 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGG CCAAGCGCTT GTATGGCTGC ACCGAATGCG GCGCGACCTT CCCCAAATGG
GCCGGCCAGT GCGGCGAATG CGGGGCCTGG AACACCCTGG TCGAAACCAT GATCGAAAGC
GGCGGCGCTG CTGCACCCAG CAGCGGTCGC GCTGGCTGGA CAGGGCAGCA GGCGCAGATC
AAGACCCTGG CCGAAGTCAG TGTCGAGGAA ATCCCGCGTT TCACGACCAG CAGCACCGAA
CTGGACCGCG TGCTGGGTGG CGGCCTGGTG GATGGCTCGG TGGTGCTGAT TGGCGGTGAC
CCCGGCATCG GCAAGTCGAC CATTTTGCTA CAGACCTTGT GCAACATTGC CGTGGGCATG
CCGGCCCTGT ATGTCACGGG GGAGGAGTCG CAGCAGCAGG TGGCCATGCG CTCGCGGCGG
CTGGGCCTAC CCCAGGACCA ACTCAAGGTG ATGACCGAAA CCTGCATCGA GACGATCATT
GCCACGGCGC GGGTCGAGAA GCCGCGGGTA ATGGTGATCG ACTCGATCCA GACCATTTTC
ACCGAGCAGT TGCAATCGGC CCCGGGCGGC GTGGCCCAGG TGCGCGAAAG CACAGCGTTG
CTGGTGCGCT ATGCCAAGCA AAGCGGTACG GCAATCTTCC TGGTCGGCCA CGTGACCAAG
GAGGGCTCGC TGGCTGGCCC AAGGGTGCTG GAGCACATGG TCGACACGGT GCTGTATTTC
GAAGGTGAGT CCGATGGCCG CCTGCGCTTG CTGCGGGCGG TCAAGAATCG TTTTGGCGCG
GTCAATGAGC TGGGCGTGTT CGGCATGACC GATCGTGGCC TCAAGGAGGT ATCCAACCCG
TCGGCGATCT TCCTCAACCG TACCCAGGAA GAGGTGCCGG GTAGCGTGGT GATGGCAACC
TGGGAGGGTA CCCGGCCAAT GCTGGTCGAG GTGCAGGCGC TGGTCGACGA TAGCCATCTG
GCCAACCCGC GGCGGGTAAC CTTGGGCCTG GACCAGAACC GTCTGGCCAT GTTGTTGGCG
GTGCTCCACC GCCATGGCGG TATCCCGACC CATGACCAGG ATGTGTTTCT CAACGTGGTC
GGCGGGGTGA AGGTGCTGGA AACGGCTTCG GACCTGGCCC TGCTGGCGGC GGTGATGTCG
AGCTTGCGCA ACCGGCCACT GGCCCATGGT TTGCTGGTGT TTGGCGAGAT CGGATTGTCG
GGCGAGGTAC GCCCGGTACC CAGTGGCCAG GAGCGCTTGA AGGAAGCGGC CAAGCACGGC
TTCAAGCGTG CCATCGTGCC CAAGGGCAAT GCGCCGAAAG AAGCGCCTGC GGGGTTGCAG
GTGATTGCCG TTACCCGGCT GGAACAGGCG CTGGATGCAT TGTTCGAATA G
|
|---|
| Protein sequence | MAKAKRLYGC TECGATFPKW AGQCGECGAW NTLVETMIES GGAAAPSSGR AGWTGQQAQI
KTLAEVSVEE IPRFTTSSTE LDRVLGGGLV DGSVVLIGGD PGIGKSTILL QTLCNIAVGM
PALYVTGEES QQQVAMRSRR LGLPQDQLKV MTETCIETII ATARVEKPRV MVIDSIQTIF
TEQLQSAPGG VAQVRESTAL LVRYAKQSGT AIFLVGHVTK EGSLAGPRVL EHMVDTVLYF
EGESDGRLRL LRAVKNRFGA VNELGVFGMT DRGLKEVSNP SAIFLNRTQE EVPGSVVMAT
WEGTRPMLVE VQALVDDSHL ANPRRVTLGL DQNRLAMLLA VLHRHGGIPT HDQDVFLNVV
GGVKVLETAS DLALLAAVMS SLRNRPLAHG LLVFGEIGLS GEVRPVPSGQ ERLKEAAKHG
FKRAIVPKGN APKEAPAGLQ VIAVTRLEQA LDALFE
|
|---|
| |