| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4621 |
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| Symbol | hmgA |
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| ID | 1041590 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 5243178 |
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| End bp | 5244479 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637148019 |
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| Product | homogentisate 1,2-dioxygenase |
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| Protein accession | NP_746730 |
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| Protein GI | 26991305 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3508] Homogentisate 1,2-dioxygenase |
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| TIGRFAM ID | [TIGR01015] homogentisate 1,2-dioxygenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.356023 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACCGCG ACACGTCGCC CGACCTTCAC TACCTGAGTG GCTTCGGCAA CGAATTCGCC
AGCGAAGCAT TGCCCGGGGC GCTGCCTGTT GGGCAGAACT CCCCGCAGAA GGCCCCGTAT
GGCCTGTATG CCGAGCTGCT GTCGGGCACG GCGTTCACCA TGGCCCGCAG CGAGCTGCGC
CGTACCTGGC TGTACCGCAT TCGCCCTTCT GCCTTGCACC CACGCTTCGA GCGCCTGGCG
CGCCAGCCGC TCGGCGGGCC ACTGGGTGGC ATCAACCCCA ACCGCCTGCG CTGGAGCCCG
CAGCCGATTC CTGCTGAACC GACCGATTTC ATCGAAGGTT GGCTGCCCAT GGCTGCCAAC
GCCGGAGCGG AAAAACCGGC TGGCGTGAGC ATCTACATCT ACCGCGCCAA CCGGTCCATG
GAACGGGTGT TCTTCAACGC AGACGGTGAG CTGCTACTGG TGCCGGAACA GGGCCGCCTG
CGTATCGCCA CCGAGCTGGG CGTGATGGAG GTCGAACCGT TGGAAATTGC GGTGATCCCA
CGTGGCATGA AGTTCCGCGT CGAACTGCTC GACGGCCAGG CCCGTGGCTA CATCGCGGAA
AACCACGGTG CGCCGCTGCG TCTGCCGGAC CTGGGCCCGA TCGGCAGCAA CGGCCTGGCC
AACCCCCGCG ACTTCCTCAC GCCTGTGGCC CACTACGAAG AAGCCGAAGG CCCGGTGCAA
CTGGTACAGA AGTTCCTGGG TGAGCACTGG GCCTGCGAGC TGCAGCACTC GCCACTGGAC
GTTGTGGCCT GGCATGGCAG CAACGTGCCG TACAAGTATG ACCTGCGCCG CTTCAACACC
ATCGGCACGG TCAGCTTCGA CCACCCGGAC CCCTCGATCT TCACCGTGCT CACCTCGCCA
ACCAGCGTGC ATGGCATGGC CAACATGGAC TTCGTGATTT TCCCGCCACG CTGGATGGTG
GCCGAGAACA CCTTCCGTCC GCCATGGTTC CACCGCAACC TGATGAACGA GTTCATGGGC
CTGATCAATG GCGCCTACGA CGCCAAGGCC GAGGGCTTCC TGCCGGGTGG TGCCTCGTTG
CACGGGGTGA TGAGTGCCCA TGGCCCCGAC GCCGAAACCT GTGAAAAGGC CATTGCCGCT
GACCTGGCGC CACACAAGAT CGACAACACC ATGGCCTTCA TGTTCGAGAC CAGCCAAGTG
TTGCGCCCGA GCCTGCAAGC CCTTGAATGC CCGCAATTGC AGGCCGACTA CGATAGTTGC
TGGGCGACTT TGCCGAGCAC CTTCAACCCG AACCGGAGAT AA
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| Protein sequence | MNRDTSPDLH YLSGFGNEFA SEALPGALPV GQNSPQKAPY GLYAELLSGT AFTMARSELR
RTWLYRIRPS ALHPRFERLA RQPLGGPLGG INPNRLRWSP QPIPAEPTDF IEGWLPMAAN
AGAEKPAGVS IYIYRANRSM ERVFFNADGE LLLVPEQGRL RIATELGVME VEPLEIAVIP
RGMKFRVELL DGQARGYIAE NHGAPLRLPD LGPIGSNGLA NPRDFLTPVA HYEEAEGPVQ
LVQKFLGEHW ACELQHSPLD VVAWHGSNVP YKYDLRRFNT IGTVSFDHPD PSIFTVLTSP
TSVHGMANMD FVIFPPRWMV AENTFRPPWF HRNLMNEFMG LINGAYDAKA EGFLPGGASL
HGVMSAHGPD AETCEKAIAA DLAPHKIDNT MAFMFETSQV LRPSLQALEC PQLQADYDSC
WATLPSTFNP NRR
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