| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4606 |
|---|
| Symbol | |
|---|
| ID | 1045702 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 5226666 |
|---|
| End bp | 5229056 |
|---|
| Gene Length | 2391 bp |
|---|
| Protein Length | 796 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637148004 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | NP_746715 |
|---|
| Protein GI | 26991290 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTCA CCCCGCGTTG CGTCCCTCTC TGGTTCGGCC TTGCTGCGCT CCCGGCCTTC
GCTGTCGCCC CCCTGGCAAC CGCGGCCGAG CAGCTGCAGG CCTATGCCTT CGCCCAGCCG
GCCCAACCCT TGGCCCAGGC CCTGAACGCC TTCAGCCGTA CCACTGGCCA GAGCGTGGTC
TACACCCTCG AGCTGCCGGG CGTGCAAGCG CCAGCGCTGA ATGGCCGGTT CAGCGCCGAG
CAGGCGCTGC AACAACTGCT GGGCAACGCT GGGCTGGCCT GGCGCCGCGT CGACGCACGT
ACCCTGACCC TCGAACCAGC AGACACCTCC GGAGCCCTCA GCCTGCAGGC CACCACCGTG
ACCTCGCAAC TGGACGACTA CAGCTACCAG CCCCCGGCCA GCGCTTCGAT CATGCGCGGC
CAGGGCCCGA ACCAGGACAT CCCCCAGGCA ATCAACGTGG TACCGGCCCA GGTCATCCGC
GACCAGGCCC CGCGCAACCT CGATGATGCC CTGGCCAACG TCAGTGGCAT TACCCAGGGC
AACAACTTCG GCGGCACATC CGACACGGTT ATGAAACGTG GCTTCGGCGA CAACCGCGAC
GGCTCGATCA TGCGCGATGG CATGCCCGTG GTGCAGGGTC GCAACCTCAA CGCCAGCACC
GAGCGGGTCG AAGTGCTCAA GGGCCCTGCC TCGCTGCTGT ACGGTATCCA GGATCCGGGT
GGGGTCATCA ACGTGGTCAG CAAGCGTCCG CAGTTGCAGC AGTACAACGC CCTGACCGTG
CGCGGCTCGA CCTATGGCAG CGGCAAGAAC GGCAGCGGTG GCGGGCTCGA CAGCACGGGC
GCACTGGGTG ACAGCAACTT CGCCTACCGC CTGGTCGTCG ACCACGAAGA CGAGGACTAC
TGGCGTAACT ACGGCGTGCA CCGCGAATCG CTGGTGGCGC CGTCGCTGGC CTGGCTGGGC
GAAGACACCC AGGTGGTGCT GGCCTACGAG CACCGTGAAT TTCTCTATCC GTTCGACCGT
GGCACCGCGT TCGGCAACAA CGGCCACCCG CTGAACATCC CTGCCACGCG CCGCCTGGAC
GAGCCGTTCA ACGACATGGA AGGGCGCTCC GACCTGTATC GCCTGGAAGT CGACCATCAG
CTGGCCGATG ACTGGAAGCT GCACTTCGGC TACAGCTTCA ATCGTGAGAC CTACGATGCC
AGCCAGGTTC GCGTGACCGG CGTCAACGAA ACCCAAGGCA CGCTGACACG CAGCATCGAC
GGTACCCACA ACGCCATGAG CCGTGACCAG TTCGTGACCC TGAGCCTCAA TGGCAATGTC
GAGCTGGCGG GGATGCAGCA TGACCTGCTG TTCGGCATTG ACCATGAAGA CCGCAAGATC
TTTCGCGGTG ACCTGATTCG CCAGACACCA CAGTCCACGT TCAGTTATCT GGACCCGGTC
TACGGGCAGG AAGTGGAGGG CACCAACGTG CGAGCCAGCG ACAGCGACCA GACCGACAAG
CTGCGCACCG ATGCGCTGTT CGTGCAGGAC GCGCTGCACC TCGATGAGCA CTGGATCCTT
GTAGCAGGTG CGCGTTTCCA GCAGTACGAC CAGTACGCTG GCCGCGGTCG CCCGTTCAAG
GCCAATACCG ACATCAGTGG CCAGGCCTGG GTACCTCACG CCGGTATCGT TTACAAAGTC
GACGACCAGC TCTCGTTCTA TGGCAGCTAC AGCGAGTCGT TCAAGCCCAA CTCGACCATC
GCGCCGCTGA CCGGCAATGT CGTGCTCGAC TCCTCGGTGG CACCTGAGGA GGGCAAGGCG
TGGGAGCTGG GCGCCAAGCT CGACATGCCA GGCCGCATCA CAGGCACCCT GGCATTGTTC
GATATCACCA AGCGCAATGT ACTGGTCTCG AACTTTGACG CCGTCACAAG CGAGACGGTC
TACAGCAATG CGGGTGAGGT CAGTTCACGC GGTGTGGAAC TCGACGTGAC CGGCCAGCTC
AGCGAGCGCT GGAGCCTGAT CGGCAGCTAT GCACTGACCG ATGCCAAGGT CACCAAGGAC
CCTGATCTTG AGGGCAATCG CCTGCAGAAC GTGGCCCGCC ACAGCGGCTC GCTGTCGGCG
GTGTATGACT TTGGTAGCCT GTTCGGGAGT GACCGGCTGC GCTTCGGTGC CGGCGCCCGT
TATGTGGGCG AGCGTTCGGG TAACGCGACC AATACCTTCG ACCTGCCGAG CTATACCGTT
GCCGATGCGT TTGCCACTTA TGAAACCAAA CTCGACGAAC ACAACGTGCG CCTGCAACTG
AACGTGAAGA ACCTGTTCGA CAAGGTGTAT TACAGCTCGG CGGTGAACCA GTACTTTGTG
GCGATTGGCG ATGCGCGGCA GGTCAGTTTG TCGAGCACCT TCGAGTTTTA G
|
|---|
| Protein sequence | MKFTPRCVPL WFGLAALPAF AVAPLATAAE QLQAYAFAQP AQPLAQALNA FSRTTGQSVV
YTLELPGVQA PALNGRFSAE QALQQLLGNA GLAWRRVDAR TLTLEPADTS GALSLQATTV
TSQLDDYSYQ PPASASIMRG QGPNQDIPQA INVVPAQVIR DQAPRNLDDA LANVSGITQG
NNFGGTSDTV MKRGFGDNRD GSIMRDGMPV VQGRNLNAST ERVEVLKGPA SLLYGIQDPG
GVINVVSKRP QLQQYNALTV RGSTYGSGKN GSGGGLDSTG ALGDSNFAYR LVVDHEDEDY
WRNYGVHRES LVAPSLAWLG EDTQVVLAYE HREFLYPFDR GTAFGNNGHP LNIPATRRLD
EPFNDMEGRS DLYRLEVDHQ LADDWKLHFG YSFNRETYDA SQVRVTGVNE TQGTLTRSID
GTHNAMSRDQ FVTLSLNGNV ELAGMQHDLL FGIDHEDRKI FRGDLIRQTP QSTFSYLDPV
YGQEVEGTNV RASDSDQTDK LRTDALFVQD ALHLDEHWIL VAGARFQQYD QYAGRGRPFK
ANTDISGQAW VPHAGIVYKV DDQLSFYGSY SESFKPNSTI APLTGNVVLD SSVAPEEGKA
WELGAKLDMP GRITGTLALF DITKRNVLVS NFDAVTSETV YSNAGEVSSR GVELDVTGQL
SERWSLIGSY ALTDAKVTKD PDLEGNRLQN VARHSGSLSA VYDFGSLFGS DRLRFGAGAR
YVGERSGNAT NTFDLPSYTV ADAFATYETK LDEHNVRLQL NVKNLFDKVY YSSAVNQYFV
AIGDARQVSL SSTFEF
|
|---|
| |