Gene PP_4560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_4560 
Symbol 
ID1046249 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp5180984 
End bp5181940 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content59% 
IMG OID637147958 
Productribonuclease BN, putative 
Protein accessionNP_746669 
Protein GI26991244 
COG category[S] Function unknown 
COG ID[COG1295] Predicted membrane protein 
TIGRFAM ID[TIGR00765] YihY family protein (not ribonuclease BN) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0395716 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTTTCC CCGACCTGCG CGGCTTGCCC CTGCACCGCG TGCTGGTTCG CACCGTCAAG 
GAATTCCTCG ACGACGAGAT GTCCACCTAT GCCTCAGCGC TGGCCTACCA GGCGCTGTTC
TCGCTATTCC CCTTCCTGTT GTTCCTGATT GCCCTGATCG GTTTCCTACA TTTGCCGGAC
TTTTTCTCCT GGCTGCGTCT GCAATCGGAA CTGGTGTTGC CGCCCCAGGC GCTGGAGCAG
GTGAACCCGG TGATCGACCA GCTGCAACAA TCCAAGGGTG GGCTGCTGTC GGTGGGTATC
GTGATCGCCC TGTGGACCGC CTCCGCCGGC GTGCGCCTGA TGATGAGCGC CATGAACGCC
GCTTACGATG TGTCCGAAGG TCGCCCGGTG TGGAAGCGTA TCCCGCTTTC CATTTTCTAC
ACCGTGGGCC TGGCTGGCAT GCTGCTGGCG GCCGCAGCTC TGATGGTGCT GGGCCCGCAG
GTGATGGAAT GGATAGCTGC CCAGATCGGC ATGCAGGAGT TCATCGTCAC ACTGTGGACC
ATCCTGCGCT GGCCGGTGAT CATCATTCTG CTGATGGTGG CAGTGGCCCT GATCTATTAC
GTGATGCCTG ATGTGAAACA GCAGTTTCGC TTCATCACCC CGGGCTCGGT GCTGGCGGTT
GTGGTGTGGA TCGTGGCCTC CCTGGGCTTT GCCTACTACG TGAAGACCTT TGCCGACTAC
AACGCCATGT ACGGCAGCAT TGGTGCAATC ATCGTGCTGT TGCTGTATTT CTATATTTCG
GCTGCCGTGC TGCTGCTCGG CGCCGAAATG AATGCGGTGA TCGAGCACAT GTCAGCCGAA
GGCAAGAACC CGGGCGAGAA AGACTTCGAC GGGGAAAAGC CCAAGGAAAC CTTGACTGTA
CTGGGTCACG AGCACCCAAA CCCGAGCAAG CCTCATAGCG TCGAGCCGAA CCCCTGA
 
Protein sequence
MIFPDLRGLP LHRVLVRTVK EFLDDEMSTY ASALAYQALF SLFPFLLFLI ALIGFLHLPD 
FFSWLRLQSE LVLPPQALEQ VNPVIDQLQQ SKGGLLSVGI VIALWTASAG VRLMMSAMNA
AYDVSEGRPV WKRIPLSIFY TVGLAGMLLA AAALMVLGPQ VMEWIAAQIG MQEFIVTLWT
ILRWPVIIIL LMVAVALIYY VMPDVKQQFR FITPGSVLAV VVWIVASLGF AYYVKTFADY
NAMYGSIGAI IVLLLYFYIS AAVLLLGAEM NAVIEHMSAE GKNPGEKDFD GEKPKETLTV
LGHEHPNPSK PHSVEPNP