| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4553 |
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| Symbol | |
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| ID | 1046186 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 5176762 |
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| End bp | 5177982 |
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| Gene Length | 1221 bp |
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| Protein Length | 406 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637147951 |
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| Product | ECF subfamily RNA polymerase sigma factor |
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| Protein accession | NP_746662 |
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| Protein GI | 26991237 |
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| COG category | [K] Transcription |
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| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGTGCCG AAGTCGAGGC TGTGTACCGG CAGGAGTCGC GGCGCATACT GGCGACACTG
ATCCGCTTGC TGGGTGATTT CGACCTGGCC GAGGAGGCCA TGCATGATGC CTTCTTCATT
GCCGTCGAAC GCTGGCAACG CGACGGTATC CCCGCCAACC CGCGAGCGTG GCTGGTTTCT
GTCGGGCGCT TCAAGGCCAT TGACGCGCTG CGCCGGCGCG TCCGCTTCGA CCGCTCCCAG
GCTGACTTGA GCATGCTGCT GGAGGGTCAG GCGCAGGACC CCAGTGAAGA AGAGCTGCTG
GCGGATGACC GCCTGCGGCT GATCTTCACC TGTTGCCATC CGGCCCTGTC GGCCGACGCT
CAGGTGCCGT TGACGCTTCG CGAAGTCTGC GACCTGACCA CCGAGCAGAT CGCCCGCGCC
TTTCTGCAAA GCCCGGCCAC CATCGCCCAG CGTATCGTGC GCGCCAAGGC CAAGATCCGT
GACGCGGGCA TACCGTACCA GGTACCGGAG CTGAGTGAAC TGCCCGAGCG CCTGGAAAGC
GTGTTGCGGG TGATCTACCT GGTGTTCAAC GAGGGCTATT CGGCGTCATC GGGCGAGACA
CTGCTGCAGC AGGCGCTGAG CGATGAAGCC ATTCGCCTGG CGCGGTTGCT GGTGCAGTTG
CTGCCCGACC CGGAGGCGGT CGGCCTGCTG GCGTTGATGT TGCTGCAGGC GTCCCGGCAG
CGGGCGCGCA TCGATGGCCA AGGCGATTTG GTGGTTCTGG AGCAGCAGGA CCGTAGCTTG
TGGGACCGGC AGTTCATTGC CGAGGGCTGT GCTCTGGTTC GCCAGGCCCT GCAGAGCCGT
GCATTCGGGG CCTATACCGT CCAGGCGGCG ATTGCTGCCG TGCATGCCGA AGCGGCGACG
GCTGAAGAGA CGGACTGGGG AGAAATCGTC GGGCTGTATG ACGTGTTGCA GCGGTATTGG
CCATCAGCGG TGGTGGCGCT TAACCGCGCG GTGGCGCTGG CGAAGCGGGA TGGGCCGGAG
GCTGGCTTGC GGGAAGTCGA AGGGATTCTG GCGCGGGGGG AGTTGCTGGA CTATCACCTG
GCACATGCGG CACGCGCCGA GTTGCATTGC CAGCTGGGAC AGGTGCAAGA GGCGCGTGCG
GCCTGGCAGC AGGCGCTGGC CTTGACCCGG CAGGCGCCTG AACGGCGGCA TATCGAGCGG
CGTTTGCAGG CTATCGAATG A
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| Protein sequence | MRAEVEAVYR QESRRILATL IRLLGDFDLA EEAMHDAFFI AVERWQRDGI PANPRAWLVS
VGRFKAIDAL RRRVRFDRSQ ADLSMLLEGQ AQDPSEEELL ADDRLRLIFT CCHPALSADA
QVPLTLREVC DLTTEQIARA FLQSPATIAQ RIVRAKAKIR DAGIPYQVPE LSELPERLES
VLRVIYLVFN EGYSASSGET LLQQALSDEA IRLARLLVQL LPDPEAVGLL ALMLLQASRQ
RARIDGQGDL VVLEQQDRSL WDRQFIAEGC ALVRQALQSR AFGAYTVQAA IAAVHAEAAT
AEETDWGEIV GLYDVLQRYW PSAVVALNRA VALAKRDGPE AGLREVEGIL ARGELLDYHL
AHAARAELHC QLGQVQEARA AWQQALALTR QAPERRHIER RLQAIE
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