Gene PP_4550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_4550 
SymbolfadD2 
ID1046183 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp5173289 
End bp5174977 
Gene Length1689 bp 
Protein Length562 aa 
Translation table11 
GC content63% 
IMG OID637147948 
Productlong-chain-fatty-acid--CoA ligase 
Protein accessionNP_746659 
Protein GI26991234 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGCCG ACTTCTGGAA TGACAAGCGC CCGGCAGGCG TGCCTTCCAC CATCGACATC 
AATGCCTACG CCTCGGTCGT CGAGGTGTTC GAGCGCTCCT GCAAGCGCTT TGCCGACCGC
CCGGCGTTCA GCAACCTGGG CGTGACCCTC AGCTACGCGG AACTGGAGCG CCATTCGGCA
GCCTTCGCTG CCTGGTTGCA GCAGCACACC GACCTCAAAC CGGGTGAGCG CATCGCCGTA
CAGATGCCCA ATGTGCTGCA GTACCCCATC GCCGTCTTCG GTGCCATGCG CGCCGGGCTG
ATCGTGGTCA ATACCAACCC GCTGTACACC GAGCGCGAGA TGCGCCACCA GTTCAAGGAC
AGTGGCGCGC GTGCGCTGGT GTACCTGAAC ATGTTCGGCA AGCGCGTGCA GGAGGTGCTG
CCCGATACCG GTATCGAATA CCTGATCGAG GCAAAGATGG GTGACCTGCT GCCGGCCGCC
AAGGGCTGGC TGGTCAACAC CGTGGTCGAC AAGTTGAAGA AGATGGTGCC GGCCTACCGG
TTGCCCCAGG CGGTGCCGTT CAAGCAGGTG CTGCGCGAGG GCCGCGGGCT GTCGCCCAAA
CCGGTGTCGC TGAACCTCGA TGACATCGCG GTGCTGCAGT ACACCGGCGG CACCACCGGC
CTGGCCAAGG GCGCCATGCT CACCCATGGC AACCTGGTGG CCAACATGCT GCAAGTGCTG
GCCTGCTTCT CGCAGCACGG CCCCGATGGG CAGAAGCTGC TGAAGGACGG CCAGGAAGTG
ATGATTGCGC CGCTGCCGCT GTACCACATC TATGCCTTCA CCGCGAACTG CATGTGCATG
ATGGTCACCG GCAACCATAA TGTGCTGATT ACCAACCCGC GGGATATTCC CGGCTTCATC
AAGGAGCTGG GCAAGTGGCG TTTCTCTGCC TTGCTGGGCC TCAATACCCT GTTTGTCGCA
CTGATGGACC ACCCGGGATT CCGTCAGCTG GACTTCTCGG CGCTGAAGGT CACCAACTCT
GGTGGCACAG CGCTGGTCAA AGCCACCGCC GAGCGCTGGG AAGACCTTAC CGGGTGCCGC
ATCGTTGAAG GCTACGGCCT GACAGAAACC TCGCCGGTGG CCAGCACTAA CCCCTACGGC
CAGCTGGCGC GTCTGGGTAC CGTGGGCATC CCCGTGGCGG GTACCGCGTT CAAGGTCATC
GATGATGATG GCAACGAACT GCCGCTGGGC GAGCGGGGCG AGCTTTGCAT CAAAGGCCCG
CAGGTCATGA AGGGGTACTG GCAGCAGCCC GAGGCAACGG CCCAGGCACT GGATGCAGAA
GGCTGGTTCA AGACCGGTGA TATCGCGGTG ATCGACCCGG ACGGCTTCAC CCGAATTGTC
GACCGCAAGA AGGACATGAT CATCGTCTCG GGCTTCAACG TGTACCCCAA CGAAATCGAG
GATGTGGTGA TGGGGCATCC CAAGGTCGCC AACTGTGCGG CTATCGGCGT GCCGGACGAG
CGTTCCGGCG AGGCGGTCAA GCTGTTCGTG GTGCCGCGCG AGGGGGGGCT GAGCGTTGAT
GAGCTGAAGG CCTACTGCAA GGCCAACTTC ACCGGCTACA AAGTACCCAA GCACATCGTG
CTGCGCGAAT CGTTGCCCAT GACGCCGGTG GGCAAGATTT TGCGGCGGGA GTTGCGCGAT
ATAGCGTGA
 
Protein sequence
MQADFWNDKR PAGVPSTIDI NAYASVVEVF ERSCKRFADR PAFSNLGVTL SYAELERHSA 
AFAAWLQQHT DLKPGERIAV QMPNVLQYPI AVFGAMRAGL IVVNTNPLYT EREMRHQFKD
SGARALVYLN MFGKRVQEVL PDTGIEYLIE AKMGDLLPAA KGWLVNTVVD KLKKMVPAYR
LPQAVPFKQV LREGRGLSPK PVSLNLDDIA VLQYTGGTTG LAKGAMLTHG NLVANMLQVL
ACFSQHGPDG QKLLKDGQEV MIAPLPLYHI YAFTANCMCM MVTGNHNVLI TNPRDIPGFI
KELGKWRFSA LLGLNTLFVA LMDHPGFRQL DFSALKVTNS GGTALVKATA ERWEDLTGCR
IVEGYGLTET SPVASTNPYG QLARLGTVGI PVAGTAFKVI DDDGNELPLG ERGELCIKGP
QVMKGYWQQP EATAQALDAE GWFKTGDIAV IDPDGFTRIV DRKKDMIIVS GFNVYPNEIE
DVVMGHPKVA NCAAIGVPDE RSGEAVKLFV VPREGGLSVD ELKAYCKANF TGYKVPKHIV
LRESLPMTPV GKILRRELRD IA