| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4546 |
|---|
| Symbol | hrpA |
|---|
| ID | 1041594 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 5163972 |
|---|
| End bp | 5167877 |
|---|
| Gene Length | 3906 bp |
|---|
| Protein Length | 1301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637147944 |
|---|
| Product | ATP-dependent helicase HrpA |
|---|
| Protein accession | NP_746655 |
|---|
| Protein GI | 26991230 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1643] HrpA-like helicases |
|---|
| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGACC ACGCCATCGA CAAACTGCTG CAAAACCTCG ACCACGCCAT GATTGCCGAC
CGCCATTGCC TGCGCCGGCA ACTGCACGAA CTGCGCAAGC GCCCCGACGA GGCGAAGCTG
GCGCAGTGGG TGGAGAAGGT CCAGGCCTCC TGCGCTCAGG TCACCGCGCG TCAGCAGAGC
GTGCCGACCG TACGCTACGA CGACAACCTG CCCATCGCCG CCAAGCGTGA CGAAATCAAG
AAGGCCCTGG CCGAAAACCA GGTATTGGTG ATCGCCGGCG AAACCGGCTC TGGCAAGACG
ACCCAGTTGC CGAAAATCTG CCTGGAGCTT GGCCGTGGCA GCCATGGGTT GATCGCCCAT
ACCCAGCCAC GCAGGATCGC AGCGCGTAGT GTGGCCGCGC GAGTCGCTGA AGAGCTGGGC
ACGCCCCTGG GCGCGCTGGT CGGCTACCAG GTGCGTTTCG AAGACCAGAG CGATTCCAAT
ACCTTGGTCA AGCTGATGAC CGACGGCATT CTCCTGGCCG AAACCCAGCA TGACCGCTTC
CTTGAACGCT ATGACACGAT CATCGTCGAC GAAGCGCACG AGCGCAGCCT GAACATCGAC
TTCCTGCTCG GCTACCTGAA AACGTTGCTG CATCGCCGAC CGGACCTGAA ACTGATCATC
ACCTCGGCCA CCATCGACCT GGAGCGCTTC TCCAGGCATT TCGACGGTGC GCCGATCATC
GAGGTGTCTG GGCGCACCTT CCCGGTGGAC ACCTGGTACC GCCCGCTGAC CAGCGAGCAG
GACGAAGAGG GCAACCAGAT CGAGGACGAC CTCACCGTCG ATCAGGCCAT CCTTGCCACC
CTCGACGAGC TGGCGCAGCA CGAACGCAGC GAGGGCAAGG GCCCGGGCGA TGTGCTGATC
TTCCTGCCGG GCGAGCGGGA AATCCGTGAT GCCGCCGAGA TCCTGCGCAA GGCGCAACTG
CGCCATACCG AGATTTTGCC GCTGTACGCG CGCCTGTCAC CGGCCGAGCA GCAGCGTATC
TTCCAACCGC ACACCGGGCG CCGCGTGGTG CTGGCCACCA ACGTCGCCGA AACCTCGCTG
ACCGTGCCTG GCATCCGCTA TGTGATTGAC ACCGGTACTG CGCGCATCAG CCGCTACAGC
TACCGCGCCA AGGTCCAGCG TCTGCCGATC GAGGCCGTGT CACAGGCCAG TGCCAACCAG
CGTAAAGGCC GTTGCGGCCG GGTCGAGCCG GGCATTTGCG TGCGTCTCTA CAGCGAAGAG
GACTTCAACA GCCGGCCAGC GTTTACCGAC CCGGAGATTC TGCGCACCAA CCTGGCGGCG
GTGATCCTGC AGATGTTGCA CCTGCGCCTG GGCGCAATCG ATGCCTTCCC GTTCATCGAG
CCGCCGGATG GCAAAGCCAT CAGCGACGGC TTCAACCTGT TGCAGGAGCT TTCGGCGGTT
AACCGCGAGA ACCAGCTGAC GCCAATTGGC CGCCAGTTGG CGCGCTTGCC GATCGACCCG
CGTCTGGGCC GCATGCTGCT TGAAGGCGCG CGCCTGGGCA GCCTGCAGGA AGTGCTGATT
GTCACCAGCG CGCTGTCGGT GCAGGACCCG CGTGAACGCC CCCCAGAACG CCAGCAGGCC
GCCGATCAGG CGCACGCACA GTGGAAGGAC GTGGACTCGG ACTTCGCTGC GCTGGTCAAC
CTGTGGCGTG GCTTCGAGGA ACAACGCCAG GCGCTGACCG CCAACCCGCT GCGCAACTGG
TGTCGCAAGC AGTTCCTGAA CTACTTGCGG CTGCGCGAGT GGCGCGATGC TCATCGTCAG
TTGGCGCTGA TTTGCCGTGA CCTGCAGCTG ACGGTGAACA AGGAACCGAC CGATTACCAG
AAGCTGCACA AGGCAATCCT CAGCGGGCTG CTCAGCCAGA TTGGCCAGAA GACCGAAGAG
GGCGACTACC AGGGCGCCCG TCAGCGGCGC TTCTGGGTGC ATCCATCTTC GGGCCTGGGG
CGCAAGCGCC CGCAGTGGGT CATGGCTGCC GAGCTGGTCG AAACCACCAA GCTGTATGCG
CGCATGGTGG CCAAGATCGA GCCGGACTGG ATCGAGCCGC TGGCCGGCCA CCTGATCAAG
AAGAACCATT TCGAGCCGCA CTGGGAGAAG AAGCGCGGGC AGGTGGTGGC CTACGAGCAG
ATCACGCTCT ACGGGCTGAT CCTGGTCGGC CGTCGGCCGG TGCACTACGG CCCGATCGAC
CCGGCGACCT CGCGCGAGCT GTTTATCCGT GAAGGCCTGG TGGGTGGCGA AATCCAGTCG
CGGGCCAAGT GCCTGGCGGC CAACAAACGC CTGCTTGGAG AGCTGGACGA GCTGGAAGCC
AAGGCTCGCC GGCGTGACAT CCTGGCTGAC GAAGAAACGC TGTACGCTTT CTATGAAGCG
CGCCTGCCGG CGGAAATCCA CCAGACGGCG ACCTTTGATA GTTGGTACCG CATGGGCAGC
CAAAAGGACG CCAACCTGCT GATCATGCGC GAGGAGGACG TGCTGGCCCG CGAGGCCAGC
GAAGTGACCG CCGCACAGTA CCCCGACAGT ATGCAGGTGG GCGATCTGCG CCTGCCGCTG
AGCTACCACT TCGAGCCCGG CCACCCCCGT GATGGTGTGA CGGTGCGGGT GCCGGCACCG
CTGTTGCCGA GCCTGCCGGG CGAGCGCCTG GAGTGGCTGG TGCCGGGCCT GCTGGAGGCC
AAGTGCGTGG CGCTGGTGCG CAACCTGCCC AAGGCCCTGC GCAAGAACTT CGTCCCGGTG
CCAGACTTCG TCAAGGCTTC GCTGGCGCGC ATGACCTTCG GCCAAGGGGC GCTGCCACAG
GCCCTGGGCC AGGAGCTGCT GCGCATGACC GGTGCACGTG TGTCGGACGA GGCCTGGGAC
GAGTCGGTCA ACCAGGTCGA GGGCCACCTG CGCATGAACA TCGAAGTGGT CGATGGCCAG
GGCAAGTTCC TTGGCGAAGG CCGCGACCTG GCGGAACTGA CCGCGCGCTT TGCTGCCGCC
AGCCAGGCTG CCCTGGCCGT GCCGCGTGAC GCCAAGGGTG AGCAGCCGGT GCAGGCCAAG
GCCTTCAGCG AAGTGAAACA GACCGCCCAG CAGAAGATCG CCGGCCTGTC GATGACCGTG
TACCCGGCAC TGGTGGAAGA CAACGGCACT GTGCGTGAAG GGCGTTTCTC GACCCAGGCC
GAAGCGGAGT TTCAGCACCG CCGCGCCTTG CAACGGCTGT TGCTGCAGCA ACTGGCCGAG
CCGGCCAAGT TCCTGCGCGG CAAGCTGCCG GGGCTGACCG AGCTGGGCCT GCTGTACCGT
GAAATGGGGC GGGTAGAAGC GCTGGTCGAA GACATTCTGC TGGCCAGCCT GGACAGTTGC
ATCCTTGAAG GCGAACAACC GTTGCCACGT GAAGGTGCGG CCTTGGCCGC GCTGGCTGAA
CGCAAGCGCG GCAGCTGGGC CGAGCATGCC GAGCGCCTGG CAAGGCAGAC CCTGGAAGTG
CTGAAGCTGT GGCATGGTCT GCAGAAACGC TTCAAGGGCA AGATCGACCT GAGCCAAGCG
GTGGCACTGA ACGACATCAA GCAGCAGCTA GGCAACCTGG TGTACCCGGG CTTCGTACGC
GAAACGCCTG GGGTGTGGTT CAAGGAGTTG CCGCGTTACC TCAAGGCGGT TGAATTGCGC
CTCGAGAAAC TCGGCTCGCA AGTACAGAAG GACCGGGTGT GGAGCGGCGA ATTGGCCAAC
CTGTGGGCGC AGTACAAGGC CCGTGCCGAC AAGCATGCCC AGGAAGGCAA GCGCGATGAG
CAACTGACCG TGTACCGCTG GTGGCTGGAA GAATATCGAG TGTCGCTGTT TGCCCAGCAG
TTGGGGACCA AGGTGCCGAT TTCTGACAAG CGATTGAGCA AACAATGGAG TCAGGTGGAA
GGCTAA
|
|---|
| Protein sequence | MTDHAIDKLL QNLDHAMIAD RHCLRRQLHE LRKRPDEAKL AQWVEKVQAS CAQVTARQQS
VPTVRYDDNL PIAAKRDEIK KALAENQVLV IAGETGSGKT TQLPKICLEL GRGSHGLIAH
TQPRRIAARS VAARVAEELG TPLGALVGYQ VRFEDQSDSN TLVKLMTDGI LLAETQHDRF
LERYDTIIVD EAHERSLNID FLLGYLKTLL HRRPDLKLII TSATIDLERF SRHFDGAPII
EVSGRTFPVD TWYRPLTSEQ DEEGNQIEDD LTVDQAILAT LDELAQHERS EGKGPGDVLI
FLPGEREIRD AAEILRKAQL RHTEILPLYA RLSPAEQQRI FQPHTGRRVV LATNVAETSL
TVPGIRYVID TGTARISRYS YRAKVQRLPI EAVSQASANQ RKGRCGRVEP GICVRLYSEE
DFNSRPAFTD PEILRTNLAA VILQMLHLRL GAIDAFPFIE PPDGKAISDG FNLLQELSAV
NRENQLTPIG RQLARLPIDP RLGRMLLEGA RLGSLQEVLI VTSALSVQDP RERPPERQQA
ADQAHAQWKD VDSDFAALVN LWRGFEEQRQ ALTANPLRNW CRKQFLNYLR LREWRDAHRQ
LALICRDLQL TVNKEPTDYQ KLHKAILSGL LSQIGQKTEE GDYQGARQRR FWVHPSSGLG
RKRPQWVMAA ELVETTKLYA RMVAKIEPDW IEPLAGHLIK KNHFEPHWEK KRGQVVAYEQ
ITLYGLILVG RRPVHYGPID PATSRELFIR EGLVGGEIQS RAKCLAANKR LLGELDELEA
KARRRDILAD EETLYAFYEA RLPAEIHQTA TFDSWYRMGS QKDANLLIMR EEDVLAREAS
EVTAAQYPDS MQVGDLRLPL SYHFEPGHPR DGVTVRVPAP LLPSLPGERL EWLVPGLLEA
KCVALVRNLP KALRKNFVPV PDFVKASLAR MTFGQGALPQ ALGQELLRMT GARVSDEAWD
ESVNQVEGHL RMNIEVVDGQ GKFLGEGRDL AELTARFAAA SQAALAVPRD AKGEQPVQAK
AFSEVKQTAQ QKIAGLSMTV YPALVEDNGT VREGRFSTQA EAEFQHRRAL QRLLLQQLAE
PAKFLRGKLP GLTELGLLYR EMGRVEALVE DILLASLDSC ILEGEQPLPR EGAALAALAE
RKRGSWAEHA ERLARQTLEV LKLWHGLQKR FKGKIDLSQA VALNDIKQQL GNLVYPGFVR
ETPGVWFKEL PRYLKAVELR LEKLGSQVQK DRVWSGELAN LWAQYKARAD KHAQEGKRDE
QLTVYRWWLE EYRVSLFAQQ LGTKVPISDK RLSKQWSQVE G
|
|---|
| |