| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4458 |
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| Symbol | |
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| ID | 1041954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 5059251 |
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| End bp | 5060831 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637147851 |
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| Product | opine ABC transporter, periplasmic binding protein, putative |
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| Protein accession | NP_746569 |
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| Protein GI | 26991144 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.124294 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000632484 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAGCAT TAGGATTGAC CCTCCGATCG AGCGCCTTAG CTGCGTTAGT AACGTTGTCA
GGGATCAGCC CTTTGGCACT GGCTCAAGAT AGCGCTCGCG CTACGATCTC AGTTAGTCCA
GGCATTGCTG ATATCACCAG TCTTGACCCG CACCGTGCTT CGCTCGTAGG TGATAAAGGC
ATCGTTGCCG AGATGTTCAA TGCGTTGGTG CGGTTCCCTC CAGGCAGTTC AGATCCAGCC
GCGCTGGAAG CGGATCTCGC TGAGCGCTGG GAATCCTCTG ATGACAAGAA GGTTTGGACT
TTCTTCCTCC GCAAAGGGGT GATGTTCCAT GGTGGTTATG GCGAGCTGAA GGCTGCCGAC
GTGGTTTACT CCCTGCAAAG GGCAGCAGAC CCGAAGCGCT CCAGCTTTTC AGCCAACTTT
ACTGCTCTGG AGAAAGTTGA GGCCTTGGAC GACTACACGG TCAAGGTAAC CCTCAAATAT
CCGGATACTG CATTCCTTGG CCGGGTATCG AACTACCACG GCGGTCAGAT CGTCAGTAAG
GCCGCAGCGG AGAAGCTGGG TGAGCGTTAT GGCCAAGCGC CAATCGGAAC TGGCCCATTC
GCTTTCTCGG AGCACATCAC CCAGCAGTAT GTGAAATTGG TGGCCAACGA CCAGTATTTT
CGCGGGAAGC CAAAGCTTGG CGCGATTGTT TACAGGATGA TCCCTTCTGA TAGCGCTCGC
GAGTTGGCTT TTGCCTCCGA TGAGCTTGAT CTGATGCTCG GCAAGCGCGA GCAGCGCTGG
GTCGAGCGCA GCAGGGCTCG TGGTGTGAAC GTGGACGTTT TTGAGCCTGC CGAATTCCGT
ACTCTCTTTC TTAACCGGAA TATCAAGCCG TTAGACGACG TCAAGGTTCG GCAAGCTATC
GCTGCGTCGG TCAACATCAA TGAGATCATT CGCTACGCGG GTAAAGATGT AGCTGATGGC
GGATGCTCCA TCATACCCAA TGGCTACCAG GGGCTTGATT GCAGTGCCGG GCCATACGCT
TACGATCCTG CGCACGCGAA AGCCTTGTTG GCCAGCGCGG GTTATCCCAA CGGGTTAAAA
CTCAAATCGG TTGTTTCCAA CGCGGCCCCG CAATTGCCGA TCATGGAGAT TATCCAAGCC
CAGCTGGCCA AGGCAGGTAT CACCTTGGAA ATGGAAGTCG TGGATCACGC GACTTACCAG
GCCAAAAGCC GTCAAGACCA GAGCGCGATC GTGTTTTACG GTGCTGCTCG ATATCCGGGC
GCCGACTACT GGCTGACAGA GTTTTACGAT TCGGCTTCTG CCATCGGCGC ACCCGCTGCA
ATGTCGAATT TCGGACATTG CTCAGTAGCT GATGATGCCA TCCGGAAAGC CAGGGTCGAG
GCTGATCCGC AGACTCAACT CGATTTGTGG AAAAAGGCGC AGGTTCAGAT TCACGACGAC
GTATGCGCCA TCCCTTTGTT TGGTCTGAAA CAGGTCTGGG CTAAAGCTGC CAGCGTGGAT
TATGGGTATG TCCTCCATGG TGCTCTGAAT TTGCAACCGC CAGTCACCGA GCTCACTACG
GTCAAACGGG ATGATCAGTA A
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| Protein sequence | MKALGLTLRS SALAALVTLS GISPLALAQD SARATISVSP GIADITSLDP HRASLVGDKG
IVAEMFNALV RFPPGSSDPA ALEADLAERW ESSDDKKVWT FFLRKGVMFH GGYGELKAAD
VVYSLQRAAD PKRSSFSANF TALEKVEALD DYTVKVTLKY PDTAFLGRVS NYHGGQIVSK
AAAEKLGERY GQAPIGTGPF AFSEHITQQY VKLVANDQYF RGKPKLGAIV YRMIPSDSAR
ELAFASDELD LMLGKREQRW VERSRARGVN VDVFEPAEFR TLFLNRNIKP LDDVKVRQAI
AASVNINEII RYAGKDVADG GCSIIPNGYQ GLDCSAGPYA YDPAHAKALL ASAGYPNGLK
LKSVVSNAAP QLPIMEIIQA QLAKAGITLE MEVVDHATYQ AKSRQDQSAI VFYGAARYPG
ADYWLTEFYD SASAIGAPAA MSNFGHCSVA DDAIRKARVE ADPQTQLDLW KKAQVQIHDD
VCAIPLFGLK QVWAKAASVD YGYVLHGALN LQPPVTELTT VKRDDQ
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