| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4405 |
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| Symbol | |
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| ID | 1041913 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 4997100 |
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| End bp | 4998098 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637147801 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | NP_746519 |
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| Protein GI | 26991094 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.382822 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTCAAG ACACCAGGCC GGTACCTGCC GGCTTCAGTG AACAGCAATT GCACACCTTG
TTCGATTTGA TCAGCGATGG CATCTGGGAC TGGAATGCCA ATACGGGTTA CGTCTATCGC
AACCCGGGCT GGTACAGCAT GCTGGGTTAT GCCAGCCACT CCATGGCCAA CTCGGTATTT
ACCTGGGAAA GCGTGATCCA TCCCGAAGAC TATCCACGGG TAATGGCCCA TTTCGAGGCC
TACATCAATC ATCGCAACGA GCGCTACCGC ATTGAATACC GTTGCCGTTG TCAGGACGGC
AGCTACATCT GGATCGAAGA CAGCGGCTAC ATCATCGCGC ATAACGAGGA CGGTTCCGTG
GCACGCATGC TGGGTGCGCA TCGCAATATC GACGCTGGCA AGCGTTTGGT GTCTCAACTG
GAACAGAAGA ACCAGTCGCT GGAGTTTCAG GTGGCCGAAC GCACCCGTGA GTTGTCCTGG
GTGAACCAGC AGTTGCAGCG GCAACTGGAC GAGAACCGTG AATTGGCCGA ACGCGATGCG
TTGACCCGTG TCGCCAACCG TTACCGGCTG GAGAGCGCGT TGCAGCTGGA GTGCCAGCGC
GCCCAGCGCT TCCGCCAGCC GTTGTCGCTG ATTGCCATGG ACATGGATGA TTTCAAGCCG
ATCAACGACC GCTACGGTCA CGCCCGTGGC GATGCGGCGC TGGTCCGGGT GGCCGAAAGC
CTGCGCACCT GCTTGCGCGA ACTGGACCTG CTGGCGCGCT GGGGCGGTGA CGAGTTCGTC
ATCGTGCTGC CGCAGACCGC GCTGGGGGAG GCGCTGGATG TGGCGGCGCG CTTGCGTCAG
GTGCTGGAGC AGGTGGAGCC GGTGGGTGAC TGCCGGCTGA CCATGAGCTA TGGCGTGGTG
CAATGGCGGG AAGGGGAGGA CCAGCACGCG CTGCTGGCGC GTGCCGACAA GGCGCTCTAC
AGGGCCAAGG GGACAGGCAA GAACGCAATT GCCGAGTAG
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| Protein sequence | MSQDTRPVPA GFSEQQLHTL FDLISDGIWD WNANTGYVYR NPGWYSMLGY ASHSMANSVF
TWESVIHPED YPRVMAHFEA YINHRNERYR IEYRCRCQDG SYIWIEDSGY IIAHNEDGSV
ARMLGAHRNI DAGKRLVSQL EQKNQSLEFQ VAERTRELSW VNQQLQRQLD ENRELAERDA
LTRVANRYRL ESALQLECQR AQRFRQPLSL IAMDMDDFKP INDRYGHARG DAALVRVAES
LRTCLRELDL LARWGGDEFV IVLPQTALGE ALDVAARLRQ VLEQVEPVGD CRLTMSYGVV
QWREGEDQHA LLARADKALY RAKGTGKNAI AE
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