| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4323 |
|---|
| Symbol | ccmE |
|---|
| ID | 1044576 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 4914694 |
|---|
| End bp | 4915149 |
|---|
| Gene Length | 456 bp |
|---|
| Protein Length | 151 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637147720 |
|---|
| Product | cytochrome c-type biogenesis protein CcmE |
|---|
| Protein accession | NP_746438 |
|---|
| Protein GI | 26991013 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG2332] Cytochrome c-type biogenesis protein CcmE |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.117081 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATCCGC AGCGCAAGAA ACGCCTGTTG CTCATCGTCG GCCTGCTGGT CGGCGTCGGG
GTTGCCGTCG GCTTTGCCTT GAGCGCATTG CAGCAGAACA TCAACCTGTT CTATACACCG
ACCCAGATCG CCAACGGCGA AGCCCCGCTG GACACGCGCA TCCGCGCCGG CGGCATGGTG
GAGAAAGGCT CGGTGCAGCG TTCGGCCGAC TCGCTGGACG TGCGTTTCGT GGTAACCGAC
TTCAACAAGT CGGTACCCAT CACCTACCGC GGCATCCTCC CCGACCTGTT CCGCGAAGGG
CAGGGCATCG TCGCCCTTGG CAAGCTCAAT GCCGACGGTG TGGTGGTAGC CGATGAAGTG
CTGGCCAAGC ACGACGAGAA ATACATGCCG CCCGAAGTCA CCAAGGCCCT GAAGGAAAGC
GGCCAGGCCG CTGCCGGCGG GGAGACGAAG CCATGA
|
|---|
| Protein sequence | MNPQRKKRLL LIVGLLVGVG VAVGFALSAL QQNINLFYTP TQIANGEAPL DTRIRAGGMV
EKGSVQRSAD SLDVRFVVTD FNKSVPITYR GILPDLFREG QGIVALGKLN ADGVVVADEV
LAKHDEKYMP PEVTKALKES GQAAAGGETK P
|
|---|
| |