Gene PP_4311 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_4311 
Symbol 
ID1041640 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp4902932 
End bp4904125 
Gene Length1194 bp 
Protein Length397 aa 
Translation table11 
GC content66% 
IMG OID637147709 
ProductD-amino-acid dehydrogenase 
Protein accessionNP_746427 
Protein GI26991002 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0665] Glycine/D-amino acid oxidases (deaminating) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.102581 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCAGC GGGTAACGGT GATCGGTGGT GGAGTGGTGG GCCTGGCGAC GGCTTACGCG 
CTGGTTCGGG AAGGGTGGTC GGTTGACCTG ATCGAGGCCC GCGACAGCCT GGCGTCGGCC
ACCAGCTTCG CCAATGGCGG GCAATTGTCC TATCGCTATG TGGCGCCGCT GGCTGATGCC
GGGGTGCCGT GGCAGGCGCT GGGCTGGCTG TTGCGGGGCG AGTCGCCATT GCGCTTGCGC
TTGCGCATGG ACCCGGCCCA GTGGCGCTGG CTGCTGGCAT TCACCCTGGC TTGTAGGCGT
AGCGTCAATC GCCGTAATGC CGGGCAATTG CTTGAGCTGG CGCTGTGCAG CCAGGCCGTT
CTGGCGCAAT GGCGCGAAGA CCATAACCTG GGAGATTTCG GCTGGCGGCG CAATGGCAAG
CTGGTGGCTT TTCGCAGTGA ACGGGCCTTT GCCCAAGGCC GGGAACAGTT GACGGACCCG
GCCAGTCAGC AGGTGCTGGC GGCTGCCGAG CTGCGCGGGC TGGAGCCTGC CCTGGATGGC
GCACCGTTTG TGGGGGGCGT GTTCACGGCG GGCGAAGAGG TTGGCGATTG CCACGTGTTT
TGCTTGCGGC TGGAGGCGCT GTTGCGCGCG TCGGGCCAGT GCCGTTTCCT GCTTGGCCGG
CCGGTGACGC AATTGGTTCA GCGCCAGGGC CAGGTCGTGG CACTGCAACT GGGCGATCAG
CAGCTGGACG TGGAGCAGTT GGTGCTGTGT GCCGGGCATC GCGGCCCAGG CTTGGCATTA
CCGGGGGTGC AGATACCGGT TTACCCGCTG AAGGGCTACA GCCTGACCGC ACCGATCAGC
GCCGGGCACC TGCCCCCGGA GGTGAGCCTT ACTGACTATG AGCGCAAAAT CGTCTATGCA
CGCCTGGGGC AGCAGCTGCG GGTAGCGGCG ATGGTGGACA TTGTCGGCTT CGACGAGTCG
GTGGACATGC GCCGTTTGCA GAGCATGCGG CGGCTGGCGC TGGAGACGCT GCCAAGGGCG
GCGGATTATG GCCAGGCGGT GGAATGGGCG GGGATGCGAC CAGCGACACC GACCGGGGTG
CCGATCATAG GTGGGACAGT GTACCGCAAC CTGTGGCTGA ACCTGGGGCA TGGGGCGTTA
GGGTTCACCT TGGCCTGTGG CAGTGCGCAG CGTTTGGCCA GGATGATGCG TTAA
 
Protein sequence
MKQRVTVIGG GVVGLATAYA LVREGWSVDL IEARDSLASA TSFANGGQLS YRYVAPLADA 
GVPWQALGWL LRGESPLRLR LRMDPAQWRW LLAFTLACRR SVNRRNAGQL LELALCSQAV
LAQWREDHNL GDFGWRRNGK LVAFRSERAF AQGREQLTDP ASQQVLAAAE LRGLEPALDG
APFVGGVFTA GEEVGDCHVF CLRLEALLRA SGQCRFLLGR PVTQLVQRQG QVVALQLGDQ
QLDVEQLVLC AGHRGPGLAL PGVQIPVYPL KGYSLTAPIS AGHLPPEVSL TDYERKIVYA
RLGQQLRVAA MVDIVGFDES VDMRRLQSMR RLALETLPRA ADYGQAVEWA GMRPATPTGV
PIIGGTVYRN LWLNLGHGAL GFTLACGSAQ RLARMMR