Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_4311 |
Symbol | |
ID | 1041640 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 4902932 |
End bp | 4904125 |
Gene Length | 1194 bp |
Protein Length | 397 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637147709 |
Product | D-amino-acid dehydrogenase |
Protein accession | NP_746427 |
Protein GI | 26991002 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.102581 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCAGC GGGTAACGGT GATCGGTGGT GGAGTGGTGG GCCTGGCGAC GGCTTACGCG CTGGTTCGGG AAGGGTGGTC GGTTGACCTG ATCGAGGCCC GCGACAGCCT GGCGTCGGCC ACCAGCTTCG CCAATGGCGG GCAATTGTCC TATCGCTATG TGGCGCCGCT GGCTGATGCC GGGGTGCCGT GGCAGGCGCT GGGCTGGCTG TTGCGGGGCG AGTCGCCATT GCGCTTGCGC TTGCGCATGG ACCCGGCCCA GTGGCGCTGG CTGCTGGCAT TCACCCTGGC TTGTAGGCGT AGCGTCAATC GCCGTAATGC CGGGCAATTG CTTGAGCTGG CGCTGTGCAG CCAGGCCGTT CTGGCGCAAT GGCGCGAAGA CCATAACCTG GGAGATTTCG GCTGGCGGCG CAATGGCAAG CTGGTGGCTT TTCGCAGTGA ACGGGCCTTT GCCCAAGGCC GGGAACAGTT GACGGACCCG GCCAGTCAGC AGGTGCTGGC GGCTGCCGAG CTGCGCGGGC TGGAGCCTGC CCTGGATGGC GCACCGTTTG TGGGGGGCGT GTTCACGGCG GGCGAAGAGG TTGGCGATTG CCACGTGTTT TGCTTGCGGC TGGAGGCGCT GTTGCGCGCG TCGGGCCAGT GCCGTTTCCT GCTTGGCCGG CCGGTGACGC AATTGGTTCA GCGCCAGGGC CAGGTCGTGG CACTGCAACT GGGCGATCAG CAGCTGGACG TGGAGCAGTT GGTGCTGTGT GCCGGGCATC GCGGCCCAGG CTTGGCATTA CCGGGGGTGC AGATACCGGT TTACCCGCTG AAGGGCTACA GCCTGACCGC ACCGATCAGC GCCGGGCACC TGCCCCCGGA GGTGAGCCTT ACTGACTATG AGCGCAAAAT CGTCTATGCA CGCCTGGGGC AGCAGCTGCG GGTAGCGGCG ATGGTGGACA TTGTCGGCTT CGACGAGTCG GTGGACATGC GCCGTTTGCA GAGCATGCGG CGGCTGGCGC TGGAGACGCT GCCAAGGGCG GCGGATTATG GCCAGGCGGT GGAATGGGCG GGGATGCGAC CAGCGACACC GACCGGGGTG CCGATCATAG GTGGGACAGT GTACCGCAAC CTGTGGCTGA ACCTGGGGCA TGGGGCGTTA GGGTTCACCT TGGCCTGTGG CAGTGCGCAG CGTTTGGCCA GGATGATGCG TTAA
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Protein sequence | MKQRVTVIGG GVVGLATAYA LVREGWSVDL IEARDSLASA TSFANGGQLS YRYVAPLADA GVPWQALGWL LRGESPLRLR LRMDPAQWRW LLAFTLACRR SVNRRNAGQL LELALCSQAV LAQWREDHNL GDFGWRRNGK LVAFRSERAF AQGREQLTDP ASQQVLAAAE LRGLEPALDG APFVGGVFTA GEEVGDCHVF CLRLEALLRA SGQCRFLLGR PVTQLVQRQG QVVALQLGDQ QLDVEQLVLC AGHRGPGLAL PGVQIPVYPL KGYSLTAPIS AGHLPPEVSL TDYERKIVYA RLGQQLRVAA MVDIVGFDES VDMRRLQSMR RLALETLPRA ADYGQAVEWA GMRPATPTGV PIIGGTVYRN LWLNLGHGAL GFTLACGSAQ RLARMMR
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