| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4274 |
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| Symbol | ligA |
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| ID | 1042621 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 4858718 |
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| End bp | 4861048 |
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| Gene Length | 2331 bp |
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| Protein Length | 776 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637147672 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | NP_746390 |
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| Protein GI | 26990965 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.185778 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCCG AAACCCGTAT CCTCGAACTG CGTGCCGAGC TCGATCAGCA CAATTATCGC
TACTACGTGC TCGACGAGCC CAGCGTGCCT GATGCCGAAT ACGACCGCCT GTTCAACGAG
CTCAAGGCGC TGGAAGCTGA ACACCCGCAC CTGGTAACCC CCGACTCGCC CACCCAGCGT
GTGGGTGGAG CTGCCTTGGC GGCGTTCAGC CAGGTACGCC ACGAAGTGCC CATGCTCAGC
CTGGGCAACG CCTTCGAAGA AGCCGACCTG CGTGAGTTCG GCCGTCGCGT GGTAGAAGGC
CTCGATCAGC CGGGCGCGGT CGACTACAGC TGCGAACCCA AGCTCGATGG CCTGGCCGTG
AGCCTGCTGT ACCGCGACGG CCAGCTGGTG CAGGGCGCCA CCCGTGGCGA CGGCACCACT
GGCGAAGACA TCAGCGCCAA CGTACGCACC GTGCGCAACA TCCCGCTCAA GTTGCAGGGT
AAGGGCTGGC CGGCAGTGCT GGAGGTGCGC GGCGAGGTGT ACATGAGCAA GGCCGGCTTC
GACCGGCTCA ATGCCGCCCA GGCCGAGGCC GGTGGCAAGA CCTTCGCCAA CCCGCGCAAC
GCTGCCGCTG GCAGCCTGCG CCAGCTGGAT TCGAAAATTA CCGCCAGCCG CCCGCTGGAG
TTCTGCTGCT ATGGCGTTGG CCAGGTGTCC GAGAGTATCG GCGACAGCCA CATCGGCATC
CTCGAACAAC TCAAGGCCTG GGGCCTGCCG ATCAGCCGCG AGCTCAAACA TGCGGCGGGC
ATCGAAGAGT GCCTGGCCTA CTATCGCGAC ATTGGCGAGC GGCGTAACAG CCTGCCGTAT
GAGATCGACG GGGTAGTGTT CAAGGTCAAC AGCCTGGCCG CCCAGCGCGA GCTGGGCTTC
CGCGCCCGTG AGCCGCGCTG GGCGATTGCC CACAAGTTCC CGGCCATGGA AGAGCTGACC
GAGGTGCTGG ATGTCGAGTT CCAGGTTGGC CGTACGGGTG CAGTAACGCC TGTGGCGCGG
CTGAAGCCGG TCAAGGTGGC CGGTGTGACG GTGTCCAACG CCACCCTGCA CAACATGGAC
GAAATCGCCC GCCTGGGCCT GCGTATCGGC GACACGGTGA TCATTCGCAG GGCCGGCGAC
GTGATCCCGC AGGTGATGCA GGTGGTGCTG GAGCGTCGTC CGCAAGGCGC CCGCCCGGTA
GAGGTGCCAA GCGCATGCCC GGTCTGTGGC TCGCAGGTCG AGCGTACCCG GCTGGTAAAG
CGCAGCAAGG GCAAGGAAAC CACCAGCGAA GGTGCGGTGT ACCGCTGTGT CGGCCGCCTG
GCCTGTGGCG CCCAGCTCAA GCAGGCGATC ATTCATTATG TGTCGCGCCG TGCCATGGAC
ATCGACGGTC TGGGTGAGAA GAGCGTCGAG CAGTTGGTGG ATGAAGGCCT GATCGGCTCG
CCGGCTGATT TGTACAAGCT GCAGTTCGAG CAGGTCGTCG GCCTGGAAGG CTTCGCCGAG
GTGTCTACCC AGAAGCTGCT GGATGCCATT GAAGCCAGCA AGCGCCCGAG CCTGGCGCGC
TTCATCTACG CGCTGGGCAT CCCGGATGTC GGCGAGGAGA CCGCCAAGGT GCTGGCCCGC
TCGCTGGGCA GCCTGGCGCG CGTGCAGCAG GCATTGCCGC AGGTGCTGAC CTATTTGCCG
GACATCGGTC TCGAAGTGGC CTACGAGATC CACAATTTCT TTGAAGACGA GCACAACCAG
AAGGTTATCC AGCAGCTGCT CGACAGCGGT ATGCAGTTGC AGGACGAAGG TGAGCTGGCT
GCCGAATTTG CCGCCAGCAC CACCTTGGCC GGGATGATCG CCAAGCTCGA CATTGCCTCC
GTCGGCCCGA CCGGTGCCGA GAAGTTGGTG GCCAGGCTCG ACAGCCTGGA CAAGATCATC
GCCGCCGACG GCATTGACCT GCGCCAGGCC CTGGCGGCCA AGCAGGCCGA CGCAGTGCGT
GAGTTCTTCA AGGATGAAGC GAACCAGAAA CTGGCCCGGG ACATCGAAGC CCAGCTGCTG
GCGTTCGGCA TGCACTGGAG CAGCGAGAAG AAGGTGGCCG AAGGCTTGCC GCTGGCCGGC
CAGACCTGGG TGCTGACCGG TACGCTGGAG CGCATGAGCC GCGACATTGC CAAGGACAAG
CTGGAAAGCC TGGGGGCCAA GGTTGCCGGT TCGGTGTCTG GCAAGACCCA TTGCGTGGTG
GCTGGGCCTG GGGCAGGCTC GAAGCTGGCC AAGGCGGCCG AGTTGGGTGT GAAGGTGCTG
GACGAAGATG CCTTTGTCAC ATTCCTGGCC GAACAGGGCA TAGCGGTCTA G
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| Protein sequence | MTAETRILEL RAELDQHNYR YYVLDEPSVP DAEYDRLFNE LKALEAEHPH LVTPDSPTQR
VGGAALAAFS QVRHEVPMLS LGNAFEEADL REFGRRVVEG LDQPGAVDYS CEPKLDGLAV
SLLYRDGQLV QGATRGDGTT GEDISANVRT VRNIPLKLQG KGWPAVLEVR GEVYMSKAGF
DRLNAAQAEA GGKTFANPRN AAAGSLRQLD SKITASRPLE FCCYGVGQVS ESIGDSHIGI
LEQLKAWGLP ISRELKHAAG IEECLAYYRD IGERRNSLPY EIDGVVFKVN SLAAQRELGF
RAREPRWAIA HKFPAMEELT EVLDVEFQVG RTGAVTPVAR LKPVKVAGVT VSNATLHNMD
EIARLGLRIG DTVIIRRAGD VIPQVMQVVL ERRPQGARPV EVPSACPVCG SQVERTRLVK
RSKGKETTSE GAVYRCVGRL ACGAQLKQAI IHYVSRRAMD IDGLGEKSVE QLVDEGLIGS
PADLYKLQFE QVVGLEGFAE VSTQKLLDAI EASKRPSLAR FIYALGIPDV GEETAKVLAR
SLGSLARVQQ ALPQVLTYLP DIGLEVAYEI HNFFEDEHNQ KVIQQLLDSG MQLQDEGELA
AEFAASTTLA GMIAKLDIAS VGPTGAEKLV ARLDSLDKII AADGIDLRQA LAAKQADAVR
EFFKDEANQK LARDIEAQLL AFGMHWSSEK KVAEGLPLAG QTWVLTGTLE RMSRDIAKDK
LESLGAKVAG SVSGKTHCVV AGPGAGSKLA KAAELGVKVL DEDAFVTFLA EQGIAV
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