| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4222 |
|---|
| Symbol | |
|---|
| ID | 1042545 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 4793995 |
|---|
| End bp | 4794978 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637147621 |
|---|
| Product | syrP protein, putative |
|---|
| Protein accession | NP_746339 |
|---|
| Protein GI | 26990914 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2175] Probable taurine catabolism dioxygenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.824381 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGTAC TTGCCGGGAT CAAGGCGCGG CCATTGATGC CCGAACGGGG CGCTTTACCG
CTGCTGATCG AAGCGCCCGA ACCGGGGCTT GGCTTGCTGG ACGTCTTTGA CGAACTCAAG
GCTATCGTCG ATGGCCACCT CGACCAGTGC GGCGGGGTAC TGCTGCGTGG TTTCGACGTG
GGCGGAGTCA CGGCCTTTCG CGAATTCGCC CAGGCCTTCG GCCACCCGCT GCTCAACTAC
GAGTTCGGCT CGACGCCGCG CAGCAATGTT ACCCAAGGGG TCTACACCTC CACGGAGTAC
CCCGCGCACC AGAGCATCCC GCTGCACAAC GAGCAGGCCT ACAGCCTCGA CTGGCCGATG
CGGATTTGGT TCTACAGTGT GATCGCCGCT CAGACTGGCG GTGAAACGCC AATTGCCGAC
AGCCGTGAAG TGTTCCGGCG CATGCCGGCC GACATACGCG AGCGCTTTGC CAGCAAGCGC
CTGATGTATG TGCGCAACTA CGGCAATGGC CTTGATGTGA GTTGGGAGCA GGTGTTCAAC
ACCGAGGACC GCAGCGTAGT GGAGGCCTAT TGCCGCGCGC ACCACATCGA CTGGGAATGG
AAGGACGACG GTGAGCTGCG CACGCGCCAG GTCTGCCAGG CCGTGGCCAC GCACCCCTGG
ACGGGGGATC AGGTATGGTT CAATCAGGCC CACCTGTTCC ATGTCTCCAA CCTACCGGCC
GAGGTGCGCG AAAGCCTGCT GGAAATCGTC GACGAGGAAG ACTTGCCGCG CAACGTCTAC
TACGGCGACG GCACACCGAT CGAGAACGAA GTGCTCGAAC GCATTCGCGC TGTGCTGGAC
GATTGCGCGA TCAGTTTCCC CTGGCAGGAA AACGACGTGC TGATGCTCGA CAACATGCTC
GCGGCGCACG CCCGGGCACC GTTCACCGGG CCACGCAAAG TGGTCGTGGC CATGGCTCAG
GGGCACCGCG AAGCGGCGCT TTGA
|
|---|
| Protein sequence | MSVLAGIKAR PLMPERGALP LLIEAPEPGL GLLDVFDELK AIVDGHLDQC GGVLLRGFDV
GGVTAFREFA QAFGHPLLNY EFGSTPRSNV TQGVYTSTEY PAHQSIPLHN EQAYSLDWPM
RIWFYSVIAA QTGGETPIAD SREVFRRMPA DIRERFASKR LMYVRNYGNG LDVSWEQVFN
TEDRSVVEAY CRAHHIDWEW KDDGELRTRQ VCQAVATHPW TGDQVWFNQA HLFHVSNLPA
EVRESLLEIV DEEDLPRNVY YGDGTPIENE VLERIRAVLD DCAISFPWQE NDVLMLDNML
AAHARAPFTG PRKVVVAMAQ GHREAAL
|
|---|
| |