Gene PP_4080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_4080 
Symbol 
ID1042171 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp4608172 
End bp4609509 
Gene Length1338 bp 
Protein Length445 aa 
Translation table11 
GC content63% 
IMG OID637147486 
Producthypothetical protein 
Protein accessionNP_746205 
Protein GI26990780 
COG category[S] Function unknown 
COG ID[COG3522] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03353] type VI secretion protein, VC_A0114 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.365614 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000139294 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTTCAC GTAACCCCGT TCTGTGGCCC GAAGGCCTGT TCGTCAAACC ACAACATTTC 
CAACAAGCTG CGCGGGCCAG TGAAGCGGCC TTGCATCAAC GCCTTGGCAG CCTCAACGCG
GCCTTCTACG GCTTCAGCGA ACTGCAGCTA AGCACCGAAT ACCTGAGCCT GGGCAAGGTC
GCCATCACCA AGGCGCGCGG CATCATGCCC GATGGCACGG TGTTCGATAT TCCTGCCGAT
CTGCCGCCGC CGCCGCCCCT GGAAATCGAG GACGACGGTT CGAAAGACAG CGAGATATTC
CTGTGCTTGC CGCTGCGTAC CGAGGGGGGC CGTGAAGTCA GCTGGCCCGA CAATGCCGCC
AACTTCCGCT ACAACGCTCA GGCAGAGGAG ATCAAGGATA CCCACAGCGC CGACGGTGAC
CTGGTGCAGG TCGACCTGGC CGTGCCCAAC CTGCAGCTCA AACGCAAAGC CGATGACAGC
AGTGCCTACA CCCGCCTGGC CGTGGCTCGT ATCCTGGAGC GGCGCCCTGA CGGTAGCCTG
CAGTTGGATG AAACGTTCTA CCCCACCAGC GTTTCGGTGC GGGCAGTGCC GGCCCTTCAG
CGGTTTCTTG AAGAAATCAC CAACACCCTG CGCGAGCGTG CGCGCAATCT TGCCGCCCGC
ATTGGCGCTT CGGGCCAGTC GGGTATCGCC GACATCCGCG ACTTCAACCT GCTGCAGGCC
ATGAACCGCT GGTGGCCGTG CTTCAACCAC CTGGCCCGGC AAGGACAAAC ACACCCCGAG
CAGTTGTACC TGTCCATGAG CCAGGCGTGT GGCGAATTCG TCACCTTCAC CGACGAGAAC
CGGCTGCCGC AGGAATACCC GGCCTACCAC CACACCGCAC TGCGTACCTC GTTCAAGCCC
CTGGAGGATA CGCTCCGTCG AGCCCTGAGC ACGGTCCTGC AACCCCGCGC CGTGTCACTG
CCGCTGGAGA CCCTGGACTT TGGTGTGATG ACGACCACGC TGGAAGACCG GCGCCTGATT
GACGAAGCCG ATTTCATCAT CGCCGTGCGC GCCGACCTGC CGCCGCAGAC GTTGCGCCAG
ATGTTCATCC AGAAAGCCAA GGTCACCTCA CTCGAATCCT TGAATGACCT GGTGCCTTTG
CAACTGCCGG GCATCCCGCT GCTGCCCCTG CCGGTTGCAC CACGCGACCT GCCCTTCCAT
GCGGGCTTCA GCTACTTCGA ACTGGACCGC CGTGACCCCG CCTGGGCCTG CATGAAGACG
GCCAACGGCT TCGGCTTCCA CGTTGCAGGT GAGTTCCCAG GGCTTGAACT GCAGTTCTGG
GCGATCAGGG GTGAATGA
 
Protein sequence
MSSRNPVLWP EGLFVKPQHF QQAARASEAA LHQRLGSLNA AFYGFSELQL STEYLSLGKV 
AITKARGIMP DGTVFDIPAD LPPPPPLEIE DDGSKDSEIF LCLPLRTEGG REVSWPDNAA
NFRYNAQAEE IKDTHSADGD LVQVDLAVPN LQLKRKADDS SAYTRLAVAR ILERRPDGSL
QLDETFYPTS VSVRAVPALQ RFLEEITNTL RERARNLAAR IGASGQSGIA DIRDFNLLQA
MNRWWPCFNH LARQGQTHPE QLYLSMSQAC GEFVTFTDEN RLPQEYPAYH HTALRTSFKP
LEDTLRRALS TVLQPRAVSL PLETLDFGVM TTTLEDRRLI DEADFIIAVR ADLPPQTLRQ
MFIQKAKVTS LESLNDLVPL QLPGIPLLPL PVAPRDLPFH AGFSYFELDR RDPAWACMKT
ANGFGFHVAG EFPGLELQFW AIRGE