Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_4080 |
Symbol | |
ID | 1042171 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 4608172 |
End bp | 4609509 |
Gene Length | 1338 bp |
Protein Length | 445 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637147486 |
Product | hypothetical protein |
Protein accession | NP_746205 |
Protein GI | 26990780 |
COG category | [S] Function unknown |
COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.365614 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000139294 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTTCAC GTAACCCCGT TCTGTGGCCC GAAGGCCTGT TCGTCAAACC ACAACATTTC CAACAAGCTG CGCGGGCCAG TGAAGCGGCC TTGCATCAAC GCCTTGGCAG CCTCAACGCG GCCTTCTACG GCTTCAGCGA ACTGCAGCTA AGCACCGAAT ACCTGAGCCT GGGCAAGGTC GCCATCACCA AGGCGCGCGG CATCATGCCC GATGGCACGG TGTTCGATAT TCCTGCCGAT CTGCCGCCGC CGCCGCCCCT GGAAATCGAG GACGACGGTT CGAAAGACAG CGAGATATTC CTGTGCTTGC CGCTGCGTAC CGAGGGGGGC CGTGAAGTCA GCTGGCCCGA CAATGCCGCC AACTTCCGCT ACAACGCTCA GGCAGAGGAG ATCAAGGATA CCCACAGCGC CGACGGTGAC CTGGTGCAGG TCGACCTGGC CGTGCCCAAC CTGCAGCTCA AACGCAAAGC CGATGACAGC AGTGCCTACA CCCGCCTGGC CGTGGCTCGT ATCCTGGAGC GGCGCCCTGA CGGTAGCCTG CAGTTGGATG AAACGTTCTA CCCCACCAGC GTTTCGGTGC GGGCAGTGCC GGCCCTTCAG CGGTTTCTTG AAGAAATCAC CAACACCCTG CGCGAGCGTG CGCGCAATCT TGCCGCCCGC ATTGGCGCTT CGGGCCAGTC GGGTATCGCC GACATCCGCG ACTTCAACCT GCTGCAGGCC ATGAACCGCT GGTGGCCGTG CTTCAACCAC CTGGCCCGGC AAGGACAAAC ACACCCCGAG CAGTTGTACC TGTCCATGAG CCAGGCGTGT GGCGAATTCG TCACCTTCAC CGACGAGAAC CGGCTGCCGC AGGAATACCC GGCCTACCAC CACACCGCAC TGCGTACCTC GTTCAAGCCC CTGGAGGATA CGCTCCGTCG AGCCCTGAGC ACGGTCCTGC AACCCCGCGC CGTGTCACTG CCGCTGGAGA CCCTGGACTT TGGTGTGATG ACGACCACGC TGGAAGACCG GCGCCTGATT GACGAAGCCG ATTTCATCAT CGCCGTGCGC GCCGACCTGC CGCCGCAGAC GTTGCGCCAG ATGTTCATCC AGAAAGCCAA GGTCACCTCA CTCGAATCCT TGAATGACCT GGTGCCTTTG CAACTGCCGG GCATCCCGCT GCTGCCCCTG CCGGTTGCAC CACGCGACCT GCCCTTCCAT GCGGGCTTCA GCTACTTCGA ACTGGACCGC CGTGACCCCG CCTGGGCCTG CATGAAGACG GCCAACGGCT TCGGCTTCCA CGTTGCAGGT GAGTTCCCAG GGCTTGAACT GCAGTTCTGG GCGATCAGGG GTGAATGA
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Protein sequence | MSSRNPVLWP EGLFVKPQHF QQAARASEAA LHQRLGSLNA AFYGFSELQL STEYLSLGKV AITKARGIMP DGTVFDIPAD LPPPPPLEIE DDGSKDSEIF LCLPLRTEGG REVSWPDNAA NFRYNAQAEE IKDTHSADGD LVQVDLAVPN LQLKRKADDS SAYTRLAVAR ILERRPDGSL QLDETFYPTS VSVRAVPALQ RFLEEITNTL RERARNLAAR IGASGQSGIA DIRDFNLLQA MNRWWPCFNH LARQGQTHPE QLYLSMSQAC GEFVTFTDEN RLPQEYPAYH HTALRTSFKP LEDTLRRALS TVLQPRAVSL PLETLDFGVM TTTLEDRRLI DEADFIIAVR ADLPPQTLRQ MFIQKAKVTS LESLNDLVPL QLPGIPLLPL PVAPRDLPFH AGFSYFELDR RDPAWACMKT ANGFGFHVAG EFPGLELQFW AIRGE
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