| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4072 |
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| Symbol | |
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| ID | 1042170 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 4599802 |
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| End bp | 4601268 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637147479 |
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| Product | hypothetical protein |
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| Protein accession | NP_746198 |
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| Protein GI | 26990773 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03362] type VI secretion-associated protein, VC_A0119 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00713132 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000101691 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGTCGCTGG TAGCTGATGT CGAGGCGCAA GAAATCACAC GGTTGCTCGC ACCCATCGAT
GCCCAGGTGC CGGCGGGGCT GTTCGATGGG GAAGACGAAA CCTACCAGGC CATTGACCAG
GAGATGGTCA AGCTGGGTGG GCTGCAGGAA GCGTCTATCG ACTGGGACTA CATCGAGGAG
GCCTCTGCTC AGTACCTGGA GCGACAGTGC AAGCATCTGC GGATCGTCGC GCACTTGAGC
GTTGCGTGGC TGCGCAGTGG CTGTTGGGAG CGCTGGGGGT TCACCTTGGC GTTGCTGGGC
GGAATGATCG ACAACTATTG GGAAACCGCT CATCCAACGC CTGGCCCGAA AGGCTTCCTG
ACCAAGCGCA AGATCGTTGG CCTGTTGTTC AATCGCTTGA TCGATGCGCT GCCGCGCCTT
GATCGTTTCA CGTACACCCC GGCTCACGCC GCAGCGGCGA AGGGTGCATT GGCCCGTTTG
CTACGTCAGC AGGAAGCCGC CCAGCTTGCC CCGGCTGTTC TGGTTGAGCT GGAGCGCCTG
TTGCACAAAC ACACGGCGCT TGCCAACGGT ATTGGCGAGC GCGATGCGCC CAAGGCTCCG
GTGGAGAGCC CGCAACCTGC GCCGCTGGCG GATGTCATCG CCACGCCGAA ACCCTGCTTG
TCGGGCGGTA ACGAGCGCGA GACGCGCCGA GCCATCTTGA GCATGGCCGA GCTGATCAAT
CAGCAGGACC CTTACGACCC GACCGGCTAT CAACTGCGGC GCTTCGGTCT GTGGGCCCAC
ATTCAGGCCG CACCGCAAAC CCGGCAGTGC AACCGTACAG AGTTGATGGC AGTGCCGCGG
GATATTGCCA GCGACTATGA GGAGGCCATC GCCGGCACTG TAATCGACGC AGCGTTGCTC
CAGCGGGTCG AAAAAAGTGT GTCGGCTTCG CCCTTCTGGA TTCGCGGCAG CTTTCTTGCC
GCAACCGCCG CGTCGCGGCT GGCGATGGGC GAAGTGGCTG AGGCCATCCG TGCGGCGACC
GCTCGTTTCG TGCTGCGCAT GCCAGCGCTG CAGCAGCTGT GCTTCAGCGA CGGTCGGGTG
TTTGTCGACG ACCAATGCCT GGCCTGGCTC AAAGGGGCAG ACGGGCAATC CGAGCAAGCC
GAAGCTTCCC AAGAGTTCAC CAGCCTTCGC GAAGAACTGG TCAGCCAGCT GGAAAGCGGC
GGCGTAGAAC CGGTGTTGCT AAGGCTGCAG GGGATGCAGG CAGATTTTCG AGCCCCTCGC
GAGCGCTGCC ATACCACCCT CATCGCAGCG GACCTGTTGG CCGCACGAGG CGTGTCCTGG
TTAGCCCAGG ACCTGTGCGC CGGGGTAGCG CGCACGATGC AGCAAACCAC CGCCAGCGAC
TGGGAGCCCG AGGTATTCCA GCGGCTTCAA CAATACGCGT CCTCCCACGT GCTGGCCGAT
CGGAACAAGG AGCAGGAGCC TCGATGA
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| Protein sequence | MSLVADVEAQ EITRLLAPID AQVPAGLFDG EDETYQAIDQ EMVKLGGLQE ASIDWDYIEE
ASAQYLERQC KHLRIVAHLS VAWLRSGCWE RWGFTLALLG GMIDNYWETA HPTPGPKGFL
TKRKIVGLLF NRLIDALPRL DRFTYTPAHA AAAKGALARL LRQQEAAQLA PAVLVELERL
LHKHTALANG IGERDAPKAP VESPQPAPLA DVIATPKPCL SGGNERETRR AILSMAELIN
QQDPYDPTGY QLRRFGLWAH IQAAPQTRQC NRTELMAVPR DIASDYEEAI AGTVIDAALL
QRVEKSVSAS PFWIRGSFLA ATAASRLAMG EVAEAIRAAT ARFVLRMPAL QQLCFSDGRV
FVDDQCLAWL KGADGQSEQA EASQEFTSLR EELVSQLESG GVEPVLLRLQ GMQADFRAPR
ERCHTTLIAA DLLAARGVSW LAQDLCAGVA RTMQQTTASD WEPEVFQRLQ QYASSHVLAD
RNKEQEPR
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