| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4043 |
|---|
| Symbol | gnd |
|---|
| ID | 1042095 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 4556490 |
|---|
| End bp | 4557473 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637147450 |
|---|
| Product | 6-phosphogluconate dehydrogenase-like protein |
|---|
| Protein accession | NP_746169 |
|---|
| Protein GI | 26990744 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1023] Predicted 6-phosphogluconate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00872] 6-phosphogluconate dehydrogenase (decarboxylating)
[TIGR00873] 6-phosphogluconate dehydrogenase, decarboxylating |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.867435 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTGG GAATCATCGG GCTGGGCCGT ATGGGCGGCA ATATCGCAAG GCGCCTGATG
CGCGCCGGTC ACCGCACCGT GGTGCACGAC CGCAACCGTG ATGCCATCAC CGGCCTGGAG
GGCGAAGGCG CCCAGGGTGC GCATGACCTC GGTGCACTGG TACAAAAGCT GAAAGCGCCG
CGCGCGGTAT GGGTGATGCT GCCGGCTGGT GACGCCACCG AGCAGACCAT CGCCCAGCTG
GCCGAAATGC TGGAGCCGGG CGATGCGATC ATCGACGGCG GCAACACCTT CTACAAGGAC
GACATGCGCC GCGCTGCAGA ACTGGCCAAG CGCGGCCTGC ATTATCTGGA CGTCGGGACT
TCCGGCGGCG TGTGGGGCCT GGACCGCGGC TACTGCATGA TGATCGGCGG CGAAAAGGAC
GTGTTCGAGC GCCTGGAACC GCTGTTCAAG GCGCTGGCGC CGGGCGTGGG CGACATCCCG
CGTACCCATG GCCGCAGCGG CGAGCACCAG CGTGCCGAGC ACGGCTACAT CCATGCCGGT
CCACCGGGCG CCGGGCACTA CGTGAAAATG GTGCATAACG GCATCGAGTA CGGCCTGATG
CAGGCCTATG CCGAAGGCTT CGACCTGCTG CGCAGCAAAG GCGGCAACGA GTTGCCCGAA
GACCAGCGCT TCGACCTGAA CGTAGCCGAA ATTGCCGAAG TGTGGCGACG CGGCAGCGTG
GTGACCTCGT GGCTGCTCGA CCTTACCGCC GATGCGCTGG TGGCCGACCC TCAGCTGTCG
CAATTCAGTG GCTCGGTGTC CGACAGTGGC GAAGGCCGCT GGACCATCGA CGCCGCCGTC
GAGCAGGCGG TGCCGGTGCC GGTGTTGTCC AGCGCACTGT TCGCGCGCTT CCGTTCGCGC
CAGCAACAGG GCACCTACGG TGACAAGATC CTCTCGGCCA TGCGCCTGGG CTTCGGTGGC
CACGTCGAGA AGAAAGGCGA ATGA
|
|---|
| Protein sequence | MQLGIIGLGR MGGNIARRLM RAGHRTVVHD RNRDAITGLE GEGAQGAHDL GALVQKLKAP
RAVWVMLPAG DATEQTIAQL AEMLEPGDAI IDGGNTFYKD DMRRAAELAK RGLHYLDVGT
SGGVWGLDRG YCMMIGGEKD VFERLEPLFK ALAPGVGDIP RTHGRSGEHQ RAEHGYIHAG
PPGAGHYVKM VHNGIEYGLM QAYAEGFDLL RSKGGNELPE DQRFDLNVAE IAEVWRRGSV
VTSWLLDLTA DALVADPQLS QFSGSVSDSG EGRWTIDAAV EQAVPVPVLS SALFARFRSR
QQQGTYGDKI LSAMRLGFGG HVEKKGE
|
|---|
| |