| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4031 |
|---|
| Symbol | nhaB |
|---|
| ID | 1042065 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 4541281 |
|---|
| End bp | 4542783 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637147440 |
|---|
| Product | sodium/proton antiporter |
|---|
| Protein accession | NP_746159 |
|---|
| Protein GI | 26990734 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3067] Na+/H+ antiporter |
|---|
| TIGRFAM ID | [TIGR00774] Na+/H+ antiporter NhaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.806507 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.318672 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACGCC CCCTGACCGG CGCCCTCGCC CACGGTTTTC TGGGCAAGTC GCCGATTTGG
TACAAGGTGG TCATCTGCCT GTTTTTGGTG CTCAACCCGC TGTTGTTGGT AACCATTGGC
CCGGTTGCGA CCGGCTGGGC ACTGGTGCTC GAATTCATCT TCACCCTGGC CATGGCCCTG
AAATGCTACC CGTTGATGCC CGGTGGCTTG TTGCTGATCG AAGCCCTGCT GTTGCAGATG
ACCACGCCAC AGGCGCTGTA CGAGGAACTG CAGCACAACT TCCCGGTAAT CCTGCTACTG
ATGTTCATGG TCGCCGGCAT CCACTTCATG AAGGAACTGT TGCTGTTCCT GTTCTCACGC
ATTTTGCTCG GGGTGCGTTC CAAGGCCATT CTGGCGCTGC TGTTTTGCGT ACTGTCGGCG
TTTCTATCCG CGTTTCTCGA TGCCCTGACC GTCACGGCGG TGATCATCAG CGCTGCGGTC
GGCTTCTACG CGGTGTACCA CCGCGTCGCG TCCGGGGCCA ATCCGCGCGA GGACAGCGCA
CTGGAGAGCG ACCAGCAAGT CGCTCACCTG CACCGGGAAG ACCTCGACCA GTTCCGCGCC
TTCCTGCGTA GCCTGCTGAT GCATGGCGCT GTGGGTACCG CCCTGGGCGG CGTTTGCACG
TTGGTGGGCG AGCCGCAGAA CCTGCTGATC GGCCACGAGA TGGGGTGGCA CTTCGTCGAC
TTCTTCTTGA AGGTGGCGCC CGTATCGCTG CCAGTGCTGG GTGCTGGCCT GGTGACCTGC
GTGCTGCTGG AAAAAGTGCG CCTGTTCGGC TACGGCACGC TGATGCCCGA ACCTGTGCGC
AGGGTGCTGA CCGCCTATGC GGCCGAAGAC GATGCGGCGC GCACCCAGGC CCAGCGCATC
GCGCTGTGGG TACAAGGGCT CGCTGCGCTG ATCCTGATCA TCTGCCTGGG GCTGCATGTG
GCCGAGGTCG GCCTGATCGG CCTGATGGTG ATCGTACTGA TCACGGCCTT CACCGGCATC
ACCGACGAGC ACCGCCTCGG CCGTGCCTTC CAGGACGCCA TGCCGTTCAC TTCGCTGTTG
GTGGTGTTCT TCGCCGTGGT CGCGGTGATT CATCAGCAGC AGCTGTTCAG CCCATTGATC
AACTGGGTGC TGGCGCTGCC GGCCGAACAG CAACCGGGCA TGCTGTACCT GGCCAACGGC
TTGCTGTCGG CGATCAGCGA CAATGTGTTC GTTGCCACCA TCTACATCAC TGAAGTGAAG
CAGGCATTTC TCGATGGCAG CATGAGCCGC GAGCATTTCG AAACCCTGGC GGTGGCGATC
AACACCGGCA CCAACCTGCC AAGCGTGGCG ACGCCGAACG GGCAGGCGGC GTTCCTGTTC
CTGCTGACCT CGGCCATTGC GCCGCTGATC CGGCTGTCGT ATGGGCGGAT GGTGTGGATG
GCGCTGCCCT ATACCGTGGT GATGGGCGGG TTGGGGTGGT GGGCGGTGAC GTACTGGCTG
TGA
|
|---|
| Protein sequence | MSRPLTGALA HGFLGKSPIW YKVVICLFLV LNPLLLVTIG PVATGWALVL EFIFTLAMAL
KCYPLMPGGL LLIEALLLQM TTPQALYEEL QHNFPVILLL MFMVAGIHFM KELLLFLFSR
ILLGVRSKAI LALLFCVLSA FLSAFLDALT VTAVIISAAV GFYAVYHRVA SGANPREDSA
LESDQQVAHL HREDLDQFRA FLRSLLMHGA VGTALGGVCT LVGEPQNLLI GHEMGWHFVD
FFLKVAPVSL PVLGAGLVTC VLLEKVRLFG YGTLMPEPVR RVLTAYAAED DAARTQAQRI
ALWVQGLAAL ILIICLGLHV AEVGLIGLMV IVLITAFTGI TDEHRLGRAF QDAMPFTSLL
VVFFAVVAVI HQQQLFSPLI NWVLALPAEQ QPGMLYLANG LLSAISDNVF VATIYITEVK
QAFLDGSMSR EHFETLAVAI NTGTNLPSVA TPNGQAAFLF LLTSAIAPLI RLSYGRMVWM
ALPYTVVMGG LGWWAVTYWL
|
|---|
| |