| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4020 |
|---|
| Symbol | |
|---|
| ID | 1046536 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 4532267 |
|---|
| End bp | 4533556 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637147431 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | NP_746150 |
|---|
| Protein GI | 26990725 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.471109 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.716709 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAAC AATCCGCCCA GCACGTCGCC AGTTACTACG CCCAGACCTA CCCCACCAAC
ATCCCATTAC GCCCTACCCT GCAAGGCACC CAGGACGCCG ATGTGCTGAT CATCGGCGCC
GGTTTCAGCG GCCTGCACAC TGCCCTGCGG CTGACCCAGG CCGGCAAGCG CGTAACGCTG
CTGGAAGCCA GCCGGGTTGC CTGGGCGGCT TCCGGACGCA ACGGTGGCCA GGCGCTGTTG
GGCTGGTCGT GCGACATGCC GCCGCTGGAG CAGGCCCTTG GCATCGAACG CACCCAACGG
CTATGGGCCA GCATGTGCTG GGCCGCCGAA GAGATGCGCG AACTGCCCCA ACGCCACGGC
TTCGACATCG ACTACCGGCA GGGCAGCCTG TGGACTGCGG TATTGCCGCG CCGGGTGAAA
ATGCTCGAAG AGGCCCTGCA TGATGCCGAG CATAAATGGG GTTACGACGC CCTGCGCCTG
ATCGGCCGTG ACGAGTTGCC GCAATGGATC GACAGCCCGC GCTACCAGGC CGCGCTGTAC
GACGCCAAAG GTGCCCACCT CAACCCGCTG AAACTGGCAC AGGGCCTGGC CAGTACCATC
GAGGCTGCCG GCGGGCAAAT CTACGAACAG AGCCAGGTGC TCAGCTACCA GCAGGCTCGC
GACGGCTATG TCGCCCGTAC CGACCGTGGC GAAGTTCGCT GCCAGGTATT GGTGCTGGCC
TGCAACGCCT ACATCGATCG CCTTGACCGC GGCCTGTCGC GCCGCCTGTT GCCCGTCGGT
TCCTACCAGG TCGCCACTGC GCCTCTGGAT GCCGACTTCG CCCATTCGTT ACTACCTCGC
AACAGTTGCG TGATCGACAA CCAGTTCGTA CCCGACTACT TCCGCCTGAC CCCAGACCAC
CGCCTGCTGT TCGGCGGTGG CTGCACTTAC CTGGGCGGCA TCCCCAAGGA CGTCGCCAGC
GCCACCCGCC CGTACCTGGA GCGGGTGTTC CCTCAACTGG CCGGGGTGGC CATCGACTAT
GCCTGGGGCG GCCACATCGA TTGCAGCATC AAGCGCACCC CGGACGTCGG CCGCGAGGGC
CAGCGCTACT GGCTGCAGGG TTTCTCCGGC CATGGCGTTC TGCCGACCCT GGCGGCGGCG
CGTGCGGTCA GCGATGCCAT TCTCGGCGAT GAAGACCTGT TGGCGCTGTA CCAAGGCATC
GACAACGGCC GCTTCCCCGG CGGCGACCTG CTGGCTGCGC CTTTGGAAGC TGCGGCAAAG
GCCTGGTACC GCATGCGCGA CCGTGTCTGA
|
|---|
| Protein sequence | MFKQSAQHVA SYYAQTYPTN IPLRPTLQGT QDADVLIIGA GFSGLHTALR LTQAGKRVTL
LEASRVAWAA SGRNGGQALL GWSCDMPPLE QALGIERTQR LWASMCWAAE EMRELPQRHG
FDIDYRQGSL WTAVLPRRVK MLEEALHDAE HKWGYDALRL IGRDELPQWI DSPRYQAALY
DAKGAHLNPL KLAQGLASTI EAAGGQIYEQ SQVLSYQQAR DGYVARTDRG EVRCQVLVLA
CNAYIDRLDR GLSRRLLPVG SYQVATAPLD ADFAHSLLPR NSCVIDNQFV PDYFRLTPDH
RLLFGGGCTY LGGIPKDVAS ATRPYLERVF PQLAGVAIDY AWGGHIDCSI KRTPDVGREG
QRYWLQGFSG HGVLPTLAAA RAVSDAILGD EDLLALYQGI DNGRFPGGDL LAAPLEAAAK
AWYRMRDRV
|
|---|
| |