Gene PP_4011 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_4011 
Symbolicd 
ID1046548 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp4520480 
End bp4521736 
Gene Length1257 bp 
Protein Length418 aa 
Translation table11 
GC content60% 
IMG OID637147422 
Productisocitrate dehydrogenase, NADP-dependent 
Protein accessionNP_746141 
Protein GI26990716 
COG category[C] Energy production and conversion 
COG ID[COG0538] Isocitrate dehydrogenases 
TIGRFAM ID[TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.775226 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.120573 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGATACC AGAAAATCAA GGTTCCGACC GACGGCACCA AAATTACCGT CAATGCAGAC 
CATTCGCTTA ACGTGCCTGA CCATCCGATC ATTCCTTACA TCGAAGGCGA CGGGATCGGC
GTCGATGTTT CGCCGGTAAT GATCAAGGTG GTCGATGCCG CCGTGCAGAA GGCCTACGGC
GGCAAGCGCA AGATTGCCTG GATGGAGGTG TACGCTGGCG AGAAAGCCAC CCAGGTGTAT
GACCAGGATA CCTGGCTACC GCAGGAAACC CTCGATGCCG TGCGTGATTA TGTGGTATCG
ATCAAGGGCC CGCTGACCAC GCCCGTCGGT GGCGGCATCC GCTCCCTCAA CGTGGCCCTG
CGCCAGCAAC TGGACCTGTA TGTATGCCTG CGGCCGGTGC TGTGGTTCCA GGGTGTGCCA
AGCCCGGTGA AAAAGCCGGG CGACGTCGAC ATGGTGATCT TCCGCGAGAA CTCCGAAGAC
ATCTATGCCG GCATCGAGTG GAAGGCCGGG TCGCCCGAGG CGAACAAGGT GATCAAGTTT
CTCAAGGAGG AAATGGGGGT CACCAAGATC CGCTTCGACC AGGACTGCGG TATCGGCGTC
AAGCCGGTGT CGAAGGAGGG TACCAAGCGT CTGGTGCGCA AGGCCCTGCA ATACGTGGTG
GATAACGACC GCGAATCACT GACCCTGGTG CACAAGGGCA ACATCATGAA GTTCACCGAG
GGTGCCTTCA AGGACTGGGG GTACGAGGTG GCGCGTGACG AGTTCGGCGC TGAACTGCTT
GATGGCGGCC CTTGGATGAA GTTCAAGAAC CCCAAGACCG GTCGCGAGGT CATCGTCAAG
GACGCCATCG CCGACGCCAT GCTGCAGCAG ATCCTGCTAC GCCCGGCCGA GTACGACGTG
ATCGCCACCC TCAACCTCAA CGGTGACTAC CTGTCCGATG CCCTGGCCGC AGAAGTGGGC
GGTATCGGCA TTGCCCCGGG CGCCAACCTG TCCGACACCG TGGCCATGTT CGAGGCCACT
CACGGCACTG CGCCCAAGTA TGCCGGGCAG GACAAGGTCA ACCCGGGCTC GGTGATCCTC
TCGGCAGAGA TGATGCTGCG CCACATGGGG TGGACCGAGG CCGCCGACCT GATCATCAAG
GGCACCAATG GCGCCATTGC GGCCAAGACC GTGACCTACG ATTTCGAGCG ATTGATGGAG
GGCGCCAAGC TGGTAAGCAG CTCAGGCTTT GGCGATGAAA TGATCAAACA CATGTAA
 
Protein sequence
MGYQKIKVPT DGTKITVNAD HSLNVPDHPI IPYIEGDGIG VDVSPVMIKV VDAAVQKAYG 
GKRKIAWMEV YAGEKATQVY DQDTWLPQET LDAVRDYVVS IKGPLTTPVG GGIRSLNVAL
RQQLDLYVCL RPVLWFQGVP SPVKKPGDVD MVIFRENSED IYAGIEWKAG SPEANKVIKF
LKEEMGVTKI RFDQDCGIGV KPVSKEGTKR LVRKALQYVV DNDRESLTLV HKGNIMKFTE
GAFKDWGYEV ARDEFGAELL DGGPWMKFKN PKTGREVIVK DAIADAMLQQ ILLRPAEYDV
IATLNLNGDY LSDALAAEVG GIGIAPGANL SDTVAMFEAT HGTAPKYAGQ DKVNPGSVIL
SAEMMLRHMG WTEAADLIIK GTNGAIAAKT VTYDFERLME GAKLVSSSGF GDEMIKHM