Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_4011 |
Symbol | icd |
ID | 1046548 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 4520480 |
End bp | 4521736 |
Gene Length | 1257 bp |
Protein Length | 418 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637147422 |
Product | isocitrate dehydrogenase, NADP-dependent |
Protein accession | NP_746141 |
Protein GI | 26990716 |
COG category | [C] Energy production and conversion |
COG ID | [COG0538] Isocitrate dehydrogenases |
TIGRFAM ID | [TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.775226 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.120573 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGATACC AGAAAATCAA GGTTCCGACC GACGGCACCA AAATTACCGT CAATGCAGAC CATTCGCTTA ACGTGCCTGA CCATCCGATC ATTCCTTACA TCGAAGGCGA CGGGATCGGC GTCGATGTTT CGCCGGTAAT GATCAAGGTG GTCGATGCCG CCGTGCAGAA GGCCTACGGC GGCAAGCGCA AGATTGCCTG GATGGAGGTG TACGCTGGCG AGAAAGCCAC CCAGGTGTAT GACCAGGATA CCTGGCTACC GCAGGAAACC CTCGATGCCG TGCGTGATTA TGTGGTATCG ATCAAGGGCC CGCTGACCAC GCCCGTCGGT GGCGGCATCC GCTCCCTCAA CGTGGCCCTG CGCCAGCAAC TGGACCTGTA TGTATGCCTG CGGCCGGTGC TGTGGTTCCA GGGTGTGCCA AGCCCGGTGA AAAAGCCGGG CGACGTCGAC ATGGTGATCT TCCGCGAGAA CTCCGAAGAC ATCTATGCCG GCATCGAGTG GAAGGCCGGG TCGCCCGAGG CGAACAAGGT GATCAAGTTT CTCAAGGAGG AAATGGGGGT CACCAAGATC CGCTTCGACC AGGACTGCGG TATCGGCGTC AAGCCGGTGT CGAAGGAGGG TACCAAGCGT CTGGTGCGCA AGGCCCTGCA ATACGTGGTG GATAACGACC GCGAATCACT GACCCTGGTG CACAAGGGCA ACATCATGAA GTTCACCGAG GGTGCCTTCA AGGACTGGGG GTACGAGGTG GCGCGTGACG AGTTCGGCGC TGAACTGCTT GATGGCGGCC CTTGGATGAA GTTCAAGAAC CCCAAGACCG GTCGCGAGGT CATCGTCAAG GACGCCATCG CCGACGCCAT GCTGCAGCAG ATCCTGCTAC GCCCGGCCGA GTACGACGTG ATCGCCACCC TCAACCTCAA CGGTGACTAC CTGTCCGATG CCCTGGCCGC AGAAGTGGGC GGTATCGGCA TTGCCCCGGG CGCCAACCTG TCCGACACCG TGGCCATGTT CGAGGCCACT CACGGCACTG CGCCCAAGTA TGCCGGGCAG GACAAGGTCA ACCCGGGCTC GGTGATCCTC TCGGCAGAGA TGATGCTGCG CCACATGGGG TGGACCGAGG CCGCCGACCT GATCATCAAG GGCACCAATG GCGCCATTGC GGCCAAGACC GTGACCTACG ATTTCGAGCG ATTGATGGAG GGCGCCAAGC TGGTAAGCAG CTCAGGCTTT GGCGATGAAA TGATCAAACA CATGTAA
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Protein sequence | MGYQKIKVPT DGTKITVNAD HSLNVPDHPI IPYIEGDGIG VDVSPVMIKV VDAAVQKAYG GKRKIAWMEV YAGEKATQVY DQDTWLPQET LDAVRDYVVS IKGPLTTPVG GGIRSLNVAL RQQLDLYVCL RPVLWFQGVP SPVKKPGDVD MVIFRENSED IYAGIEWKAG SPEANKVIKF LKEEMGVTKI RFDQDCGIGV KPVSKEGTKR LVRKALQYVV DNDRESLTLV HKGNIMKFTE GAFKDWGYEV ARDEFGAELL DGGPWMKFKN PKTGREVIVK DAIADAMLQQ ILLRPAEYDV IATLNLNGDY LSDALAAEVG GIGIAPGANL SDTVAMFEAT HGTAPKYAGQ DKVNPGSVIL SAEMMLRHMG WTEAADLIIK GTNGAIAAKT VTYDFERLME GAKLVSSSGF GDEMIKHM
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