| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4010 |
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| Symbol | cspD |
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| ID | 1046549 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 4520142 |
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| End bp | 4520408 |
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| Gene Length | 267 bp |
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| Protein Length | 88 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637147421 |
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| Product | cold-shock protein CspD |
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| Protein accession | NP_746140 |
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| Protein GI | 26990715 |
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| COG category | [K] Transcription |
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| COG ID | [COG1278] Cold shock proteins |
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| TIGRFAM ID | [TIGR02381] cold shock domain protein CspD |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0979489 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCAAGCG GTAAAGTCAA GTGGTTCAAC AATGCCAAGG GCTATGGATT CATCAATGAG
GAAGGTAAAT CCGATGACCT GTTCGCCCAT TATTCCGCCA TCCAAATGGA CGGATACAAG
ACCCTGAAGG CTGGCCAGGC CGTGGTATTC AACATCGTCC AGGGCCCCAA GGGCTTGCAC
GCCGTTGAAA TCAAAGATGC CGCGGCCGCT GCGGCAGAGG CTGCCAGAGC CTTGGGCGAG
CCGCAAAGCG AAACTGCAAA AGCCTGA
|
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| Protein sequence | MASGKVKWFN NAKGYGFINE EGKSDDLFAH YSAIQMDGYK TLKAGQAVVF NIVQGPKGLH
AVEIKDAAAA AAEAARALGE PQSETAKA
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