| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4008 |
|---|
| Symbol | clpA |
|---|
| ID | 1046551 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 4517248 |
|---|
| End bp | 4519518 |
|---|
| Gene Length | 2271 bp |
|---|
| Protein Length | 756 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637147419 |
|---|
| Product | ATP-dependent Clp protease, ATP-binding subunit clpA |
|---|
| Protein accession | NP_746138 |
|---|
| Protein GI | 26990713 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
|---|
| TIGRFAM ID | [TIGR02639] ATP-dependent Clp protease ATP-binding subunit clpA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0728152 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAACC GCGAGCTCGA AGTCACCCTC AATCTTGCCT TCAAGGAGGC CCGTTCGAAG
CGTCATGAGT TCATGACCGT CGAGCATCTG CTGCTGGCAC TCCTTGACAA TGAGGCTGCC
GCGACCGTTC TGCGCGCCTG TGGCGCCAAT CTCGACAAGC TCAAGCATGA CCTGCAAGAG
TTCATCGACT CCACCACGCC GTTGATCCCT GTCAACGACG AAGACCGTGA AACCCAGCCG
ACCCTGGGCT TCCAGCGCGT GCTGCAGCGT GCCGTGTTCC ACGTGCAAAG CTCTGGCAAG
CGCGAAGTGA CCGGCGCCAA CGTGCTGGTG GCGATCTTCA GCGAACAGGA AAGCCAGGCC
GTGTTCCTGC TCAAGCAGCA GAGCGTGGCC CGTATCGACG TGGTCAACTA CATCGCCCAT
GGCATCTCCA AGGTGCCAGG GCATGGTGCA CAGTCTGAAA GCGAGCAGGA CATGCAGGAC
GATGAGGGGG GCGAAACCTC CTCTTCGAGC AACCCGCTGG ACGCCTACGC CAGCAACCTG
AACGAGCTGG CCCGTGCCGG CCGTATCGAT CCGCTGGTAG GTCGCGAGCA GGAAGTGGAG
CGTGTGGCGC AAATCCTCGC TCGTCGGCGC AAGAACAACC CGCTGTTGGT GGGTGAGGCA
GGCGTGGGCA AGACGGCCAT CGCCGAAGGC CTGGCCAAAC GCATCGTCGA TGGTCAGGTG
CCTGACCTGC TGGCGCAGAG CGTGGTGTAC TCCCTTGATC TGGGCGCCTT GCTGGCCGGT
ACCAAATACC GTGGTGACTT CGAGAAGCGC TTCAAGGCGC TGCTCGGTGA GCTGCGCAAG
CGTCCGCAGG CCATCCTGTT CATCGACGAA ATTCACACCA TCATCGGCGC CGGTGCGGCG
TCGGGCGGGG TGATGGATGC CTCCAACCTG CTCAAGCCGC TGCTGTCGTC GGGTGAAATC
CGCTGCATCG GTTCGACTAC GTTCCAGGAG TTTCGCGGCA TCTTCGAGAA GGATCGTGCC
CTGGCGCGTC GCTTCCAGAA GGTGGATGTC AGCGAGCCAT CGGTCGAAGA CACCGTGGGC
ATTCTGCGCG GCCTGAAAGG GCGTTTCGAA AGCCACCACA ACATCGAGTA CAGCGACGAA
GCCCTGCGCG CCGCTGCCGA ACTGGCTTCG CGCTACATCA ATGACCGACA CATGCCTGAC
AAGGCCATCG ATGTGATCGA CGAGGCTGGC GCCTACCAGC GCCTGCAGCC AGAGGCCAGT
CGCGTCAAGC GCATTGATGT GCCGCAAGTA GAGGACATCG TCGCCAAGAT TGCGCGAATT
CCGCCGAAGC ACGTCACCAG TTCCGACAAG GAGCTGCTGC GCAACCTTGA GCGCGACCTG
AAACTGACCG TGTTTGGCCA GGACCAGGCA ATCGACTCGC TGGCCACCGC GATCAAGTTG
TCCCGTGCCG GCCTCAAGTC GCCAGACAAG CCGGTGGGTT CGTTCCTGTT CGCCGGCCCT
ACCGGCGTCG GCAAGACCGA AGCGGCGCGG CAATTGGCCA AGGCGCTGGG TGTGGAGTTG
GTGCGTTTCG ACATGTCTGA GTACATGGAG CGCCACACCG TGTCGCGTTT GATTGGTGCG
CCGCCGGGTT ATGTCGGTTT CGACCAGGGT GGCTTGTTGA CCGAGGCAAT CACCAAACAG
CCGCACTGCG TATTGTTGCT CGACGAAATC GAGAAGGCCC ACCCGGAAGT CTTCAATCTG
CTGCTGCAGG TGATGGACCA CGGTACCCTG ACCGACAACA ACGGGCGCAA GGCCGACTTC
CGTAACGTGA TCCTGATCAT GACCACCAAC GCCGGTGCAG AAACTGCGGC GCGGGCGTCG
ATCGGCTTTA CTCATCAGGA CCACGCGTCC GATGCCATGG AAGTGATCCG CAAGAGCTTC
ACGCCAGAGT TCCGCAACCG TCTGGATACC ATCATCCAGT TTGGCCGCCT GAGCACGGAG
ACCATCAAAA GCATCGTCGA CAAGTTCCTT ATCGAATTGC AGGCGCAGCT GGAAGACAAG
CGTGTGCTGC TGGAAGTCAG CGATGAAGCA CGCGGTTGGC TGGCGGTTTC GGGCTATGAC
GTGCAGATGG GCGCGCGGCC AATGGCGCGG CTGATCCAGG ACAAGATCAA GCGGCCGCTG
GCCGAGGAGA TCCTGTTTGG CGAGCTGGCC GAGCATGGTG GCGTGGTGCA TGTCGACCTG
CGCGATGGCG AACTGGTGTT CGACTTCGAA ACCACGGCTG AGGTCGCGTG A
|
|---|
| Protein sequence | MLNRELEVTL NLAFKEARSK RHEFMTVEHL LLALLDNEAA ATVLRACGAN LDKLKHDLQE
FIDSTTPLIP VNDEDRETQP TLGFQRVLQR AVFHVQSSGK REVTGANVLV AIFSEQESQA
VFLLKQQSVA RIDVVNYIAH GISKVPGHGA QSESEQDMQD DEGGETSSSS NPLDAYASNL
NELARAGRID PLVGREQEVE RVAQILARRR KNNPLLVGEA GVGKTAIAEG LAKRIVDGQV
PDLLAQSVVY SLDLGALLAG TKYRGDFEKR FKALLGELRK RPQAILFIDE IHTIIGAGAA
SGGVMDASNL LKPLLSSGEI RCIGSTTFQE FRGIFEKDRA LARRFQKVDV SEPSVEDTVG
ILRGLKGRFE SHHNIEYSDE ALRAAAELAS RYINDRHMPD KAIDVIDEAG AYQRLQPEAS
RVKRIDVPQV EDIVAKIARI PPKHVTSSDK ELLRNLERDL KLTVFGQDQA IDSLATAIKL
SRAGLKSPDK PVGSFLFAGP TGVGKTEAAR QLAKALGVEL VRFDMSEYME RHTVSRLIGA
PPGYVGFDQG GLLTEAITKQ PHCVLLLDEI EKAHPEVFNL LLQVMDHGTL TDNNGRKADF
RNVILIMTTN AGAETAARAS IGFTHQDHAS DAMEVIRKSF TPEFRNRLDT IIQFGRLSTE
TIKSIVDKFL IELQAQLEDK RVLLEVSDEA RGWLAVSGYD VQMGARPMAR LIQDKIKRPL
AEEILFGELA EHGGVVHVDL RDGELVFDFE TTAEVA
|
|---|
| |