Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_3958 |
Symbol | |
ID | 1046605 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 4466257 |
End bp | 4467618 |
Gene Length | 1362 bp |
Protein Length | 453 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637147368 |
Product | sodium-proton antiporter, NhaA family |
Protein accession | NP_746088 |
Protein GI | 26990663 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3004] Na+/H+ antiporter |
TIGRFAM ID | [TIGR00773] Na+/H+ antiporter NhaA |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.529436 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCATAAAC AAGAATTACC TCGCGCCCAG AAACTGGCCG AGCGCGCCTT CGCCAACCTT GAACGCTTTT TGCACATTGA AGCGGTCAGC GGCATCGTTC TGTTGATTGC CGCAGTCGCT GCCCTGATCT GGGCGAATTC CCCGGCTGCC GACAGTTATG AAGCCCTTTG GCATACCCCG TTGACGTTCG GCGTGGGCTC GCATGTCTAT TCGCAGTCCC TGCATTTCTG GATCAATGAT GGCCTGATGA CCATCTTTTT CCTGGTCGTG GGCATGGAGA TCCGCCGCGA GATCCACGAA GGTGCACTGT CCAGCCTGCG TCAAGCCACG CTTCCCATGG CAGCCGCTGT CGGCGGCGTA GCGGTACCCG CACTCCTCTA CCTGAGTTTT GGTCACGCGC CAGCAGACCA ACAAGGTTGG GCCGTGCCAA CGGCGACGGA TATCGCCTTT GCGGTGGGCG TATTGGCCCT GCTCGGCAAG TCGATCCCGT CCAACGTACG TGTATTCCTC CTCGCCCTGG CAATCATCGA TGACATCATC GCAGTCCTGA TCATCGCGTT CTTCTACTCA GGCGGCCTTG ATTACACCGG CTTCGGCGTT GCAGTGATCG GCCTGCTAAT GGTGATCGGG CTTCAGAAGA TCGGAGTGGG TTCAGCCTAC GCCTATGTCA TTCCCGGTGC GATCGTCTGG CTGGGCATCT TGTTGACCGG CGCCCACCCG ACCCTCGCAG GCGTCGTGCT GGGCCTGATG ACACCTGTCA CCGCAATGCC GATGCGTGAG CGCCCACTGG ACGCCATTAC CCGCTTCACC GGCGAATTGC TGGGGCGCGC CAAAGCGCCT GAGCAAGATG CCAGCGACCT CATGGACCCG TTGAAACGAC TGCGCCTGGC CCAGCGCGAA CTGCTGCCGC CGGTAGTGCG CATGCAAGGC ACCCTGCACC CCTGGGTAGC CTTCGGCATC ATGCCGGTGT TTGCCTTGGC CAACGCCGGG GTCAGCCTTT CGGGCGTCGA CCTGTCCGCA GAAGGCCCCC AGTGGGTCAT GATCGCCGTC GCTGTCGCCC TGGTTGCAGG AAAGCCCTTG GGCATCGTCA GCGTCAGTTG GCTGATGGTC CGCCTGGGCT GGTGCGTGCT TCCCGCCGAG GTCAACTGGC GTAGCATCAT GCTGGTCGGG CTGCTGGCCG GCATCGGTTT CACCATGTCG ATCTTCATCG CCAACCTCGC GTTCGTCGAC CCTGGCTCAC TTGGGGCCGC GAAACTCGGT GTGCTATCCG CGTCGTTGAT CGCAGCCGTG CTGGGGTTGA CCTGGGGGGT GTGGAGCATG CGCAGCGCAG CGTCTGCTAC CAAAGCCGGT TCGCCCACCT AG
|
Protein sequence | MHKQELPRAQ KLAERAFANL ERFLHIEAVS GIVLLIAAVA ALIWANSPAA DSYEALWHTP LTFGVGSHVY SQSLHFWIND GLMTIFFLVV GMEIRREIHE GALSSLRQAT LPMAAAVGGV AVPALLYLSF GHAPADQQGW AVPTATDIAF AVGVLALLGK SIPSNVRVFL LALAIIDDII AVLIIAFFYS GGLDYTGFGV AVIGLLMVIG LQKIGVGSAY AYVIPGAIVW LGILLTGAHP TLAGVVLGLM TPVTAMPMRE RPLDAITRFT GELLGRAKAP EQDASDLMDP LKRLRLAQRE LLPPVVRMQG TLHPWVAFGI MPVFALANAG VSLSGVDLSA EGPQWVMIAV AVALVAGKPL GIVSVSWLMV RLGWCVLPAE VNWRSIMLVG LLAGIGFTMS IFIANLAFVD PGSLGAAKLG VLSASLIAAV LGLTWGVWSM RSAASATKAG SPT
|
| |