| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3955 |
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| Symbol | |
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| ID | 1046609 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 4461512 |
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| End bp | 4463539 |
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| Gene Length | 2028 bp |
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| Protein Length | 675 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637147365 |
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| Product | transporter, putative |
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| Protein accession | NP_746085 |
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| Protein GI | 26990660 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.300174 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGATA CCGCGCAAGG TCTTCACGCC AGCACCGATC GCTGGCCTGC CGCGCTTTTT
GCCGTGGCAT TGGTCTTTTC GGTTTTCCAG ATCGCCACGG CGGCCTTCCC CCTGATTTCC
ACCCAAGTAC TGCGTGCAAT ACACGTGGGG TTCCTGTTGC TGGTGGTGTA CCTGAGCTAT
TCATTCGTTG GCCACCGTCG GCCGTGGCAA CCCCTTGCCT GGCTGCTGGG CCTTGCGGGA
ATGGCGACGG CTGCATACCA GTGGTACTTC GAAGGGGATC TGATTCAACG CTCCGGTGAG
CTGACCACCA GTGACCTGAT CGTGGGGCTG TTGCTTATTG GTTTGGTCTT TGAAGCCGCG
CGACGCGTCA TGGGCATAGC GTTGCCCATC ATTTGCGCCC TGTTTCTGGC CTATGGGTTG
CTTGGCCAAC ACTTGCCAGG CGAACTCGCG CATCGAGGCT ACGGCCTCGA TCAGATCGTC
AATCAGTTGG CCTTCGGCAC CGAAGGGCTG TATGGCACAC CGACCTATGT CTCAGCCACC
TACATTTACC TGTTCATCCT GTTCGGCGCA TTTCTCGAGC AGGCGGGCAT GATTCGTCTG
TTCACCGATT TCGCCATGGG GCTGTTCGGC CATCGCAGCG GAGGGCCGGC CAAAGTGTCG
GTGTTCTCCT CGGCACTGAT GGGTACCATT ACCGGCTCGG GGGTGGCCAA TGTCGTCACC
ACCGGACAGT TCACCATTCC GCTGATGAAG CGTTTTGGCT ACAAACCTGC ATTTGCCGGT
GGCGTCGAGG CGACCTCCAG CATGGGCAGC CAGCTGATGC CGCCGGTGAT GGGCGCCGTG
GCGTTCATCA TGGCCGAGAC GATCAACGTG CCCTACGCCG AGGTGGCGAA AGCCGCGCTC
ATCCCAGCAT TGCTGTACTT CGGCTCGGTC TACTGGATGG TCCACCTGGA GGCTCGGCGC
AGCCATCTGC ACGGCTTGCC TCGCGAACAG TGCCCGAGTG CCTGGGATGC GTTGCGACAA
CGTTGGTTCC TGCTGGTACC GCTGATGGTT CTGGTCGCCC TGTTGTTTTC CGGGCGAACA
CCTTTGTACT CGGGAATGGT CGGCCTGGCC CTGACCGCCA TCGTCATCCT AGGCTCGGCG
ATCATCCTGC GCGCTCAAAA AACCTGGCTG CGCGCGGCTT TCTGGGTTGC ACTCGGGATA
CTGTGTTCAG GTTTTTTCCG CATGGGGATC GGGGTGATCC TGATGGTCAT TGCCGGCCTG
GCCATTGCGT GCTGCTTTGT CCAGGGCGGC CGTGCGACCC TGCACGCATG CGTCATGGCC
CTCGCGGAGG GTGCCCGTCA TGCGGTGCCG GTGGGCATTG CCTGTGCGCT GGTCGGCGTC
ATTATCGGAG TCATCTCGCT GACCGGCCTG GCCACCACCT TTGCCGGATA CATCCTTGAC
CTGGGACGGG ACAACCTGTT CCTCTCGCTG GTGTTGACCA TGCTCACTTG CCTGGTACTG
GGTATGGGCA TCCCGACCAT CCCCAACTAC ATCATCACCA GCTCCATTGC CGCCCCCGCC
CTGTTGGAGC TCGGGGTCCC GCTGATCGTC TCGCACATGT TCGTGTTCTA TTTCGGCATC
CTGGCCGACC TGACGCCGCC AGTGGCATTG GCGTGCTTTG CAGCGGCCCC GATTGCCAAG
GAAAAAGGCC TGTTGATCAG CTTCTGGGCG GTGCGCATTG CCTTGGCCGG TTTCGTTGTG
CCCTTCATGG CGGTCTATGA CCCGGCGTTG ATGATGCAAG GTGACAGCAT GGGCTCCACG
TTGTACATGG TGATCAAGGC GGCGTTCGCG GTAGCCCTCT GGGGATGTGC GTCGATCGGG
CATTTGCGTG CCCCCATGCC CTGGTGGGAG CGCCTGTTGG CGTTCGCGGC TGGTGTGTCC
TTGATACTTG CCGCGCCCAT CAGCGATGAG GTCGGTTTTG CTTTGGGTGC GGCAGTGCTG
GGTTGGCACT ACTGGCGAAC CCGACCGGCC TCTGGCCACC TCGCATGA
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| Protein sequence | MSDTAQGLHA STDRWPAALF AVALVFSVFQ IATAAFPLIS TQVLRAIHVG FLLLVVYLSY
SFVGHRRPWQ PLAWLLGLAG MATAAYQWYF EGDLIQRSGE LTTSDLIVGL LLIGLVFEAA
RRVMGIALPI ICALFLAYGL LGQHLPGELA HRGYGLDQIV NQLAFGTEGL YGTPTYVSAT
YIYLFILFGA FLEQAGMIRL FTDFAMGLFG HRSGGPAKVS VFSSALMGTI TGSGVANVVT
TGQFTIPLMK RFGYKPAFAG GVEATSSMGS QLMPPVMGAV AFIMAETINV PYAEVAKAAL
IPALLYFGSV YWMVHLEARR SHLHGLPREQ CPSAWDALRQ RWFLLVPLMV LVALLFSGRT
PLYSGMVGLA LTAIVILGSA IILRAQKTWL RAAFWVALGI LCSGFFRMGI GVILMVIAGL
AIACCFVQGG RATLHACVMA LAEGARHAVP VGIACALVGV IIGVISLTGL ATTFAGYILD
LGRDNLFLSL VLTMLTCLVL GMGIPTIPNY IITSSIAAPA LLELGVPLIV SHMFVFYFGI
LADLTPPVAL ACFAAAPIAK EKGLLISFWA VRIALAGFVV PFMAVYDPAL MMQGDSMGST
LYMVIKAAFA VALWGCASIG HLRAPMPWWE RLLAFAAGVS LILAAPISDE VGFALGAAVL
GWHYWRTRPA SGHLA
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