Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_3949 |
Symbol | |
ID | 1046615 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 4453963 |
End bp | 4454601 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637147359 |
Product | TetR family transcriptional regulator |
Protein accession | NP_746079 |
Protein GI | 26990654 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.549729 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAACTC GCAAAACCGG TGTTCGCGCC CAGCAGGCCG ACCGTACCCG GGACAATATT CTCAAGGCCG CAGTGAAGGT CTTCAGCAAG GAAGGCTTCA CTGGCGGGCG CATCGAGCAG ATCTCCACGC TGGCCAAGTC CAACGACCGG ATGATCTATT ACTACTTCGG TAGCAAGGAA AAGCTGTTCA TCAGTGTGCT GGAACACATC TATGCCAGCT TCAACCAGGC CGAAGCGAAG CTGCGCCTCG ACCTCGCCGA CCCTGAGCAG GCCCTGCGCG AGCTGGTGGC GTTTATCTGG GACTATTATG TGCGCCACCC CGAATTCGTC ACCATCCTCG CCACCGAAAA CCTTCACCAG GGCTTGCACG CGCGCAAGTC GCAAAACCTC AGGGCGCTGT CCGGCGAAGC GGTCGGCGTG CTGCGGCCGA TCATCGAGGC AGGACAGGCA AAGGGCCTGT TCCGTGACGA TATCTGCATT ACCCACGCCT ACCTGATGAT TGCCTCGCTC TGCTACTTCT ATAACTCCAA CCGCCATACG CTCAGCTCGT TCCTGGCCGT GGACCTGGCC GACAAACAGG CCAAAGCCGA TTGGCTGACC TTCATCAGTG ACCTTGCGCT GCGCGGCTTG CGCCGCTGA
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Protein sequence | MQTRKTGVRA QQADRTRDNI LKAAVKVFSK EGFTGGRIEQ ISTLAKSNDR MIYYYFGSKE KLFISVLEHI YASFNQAEAK LRLDLADPEQ ALRELVAFIW DYYVRHPEFV TILATENLHQ GLHARKSQNL RALSGEAVGV LRPIIEAGQA KGLFRDDICI THAYLMIASL CYFYNSNRHT LSSFLAVDLA DKQAKADWLT FISDLALRGL RR
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