| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3922 |
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| Symbol | |
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| ID | 1046643 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 4427744 |
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| End bp | 4428763 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637147332 |
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| Product | putative periplasmic protease |
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| Protein accession | NP_746052 |
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| Protein GI | 26990627 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.113918 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0490355 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGAGTTTC TTGCCGAATA CGCAAGCTTT CTCGCCAAAA CCGCCACCCT GGTCATCGCC
ATCCTGGTGG TGCTGTCGGC CATCGCTGGT CTGCGTGGCA AAGGTCGGCG CAAATCGGGC
GGGCAATTAC AGGTCACCCG ACTGAACGAT TTTTACAAGG ACCTGCGTGA GCGCCTGGAG
TCCGGCCTGC TCGACAAGGC CCAGCTCAAG GCCCTGCGCA AGCAGCAGGC CAAGGCGGAA
AAACAGCAGA AGAAGGGCAA GGCCGAGGAC AAGAGCCGGG TATTCGTACT GGACTTTGAT
GGCGACATCA AAGCCTCGGC CACCGAAAGC CTGCGCAACG AAATCACCGC ACTGCTGACG
CTCGCTACCG CGCGTGACGA AGTGGTACTG CGCCTGGAAA GCGGCGGTGG CCTGGTGCAC
AGTTACGGCT TGGCTGCGTC GCAACTGGCG CGTATCCGCC AGGCGGGCAT CCCGTTGACC
GTGTGCATCG ACAAGGTGGC TGCCAGCGGT GGGTACATGA TGGCCTGCAT CGGCGAGAAG
ATCGTCAGTG CCCCATTCGC CGTACTGGGG TCTATTGGCG TGGTGGCGCA GTTGCCCAAC
GTCAACCGCC TGCTGAAAAA GCACGACATC GACTTCGAAG TGCTGACTGC TGGCGAGTAC
AAGCGCACCC TGACCGTCTT TGGCGAAAAC ACCGAGAAGG GCCGGGAGAA GTACCAGGAA
GACTTGGACA TCACTCACCA GTTGTTCAAG GATTTCGTCT CCCGCTATCG TCCGCAGTTG
CACATCGATG AAGTGGCCAC TGGCGAAGTC TGGCTGGGCG TGGCCGCCTT GAATCGCAAG
CTGGTTGACG AGTTGCAGAC CAGTGACGAG TACCTGAGCG AGCGCGCGCG CAACGCCAAC
CTGTTCCACC TGCACTATGC CGAACGCAAG AGCCTGCAGG AGCGTATTGG CATGGCCGCC
AGCGGTACTG TGGAGAACGC GGTGGTAGGC TTGTGGAGTA AACTCAGCCG CCTGCGCTAA
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| Protein sequence | MEFLAEYASF LAKTATLVIA ILVVLSAIAG LRGKGRRKSG GQLQVTRLND FYKDLRERLE
SGLLDKAQLK ALRKQQAKAE KQQKKGKAED KSRVFVLDFD GDIKASATES LRNEITALLT
LATARDEVVL RLESGGGLVH SYGLAASQLA RIRQAGIPLT VCIDKVAASG GYMMACIGEK
IVSAPFAVLG SIGVVAQLPN VNRLLKKHDI DFEVLTAGEY KRTLTVFGEN TEKGREKYQE
DLDITHQLFK DFVSRYRPQL HIDEVATGEV WLGVAALNRK LVDELQTSDE YLSERARNAN
LFHLHYAERK SLQERIGMAA SGTVENAVVG LWSKLSRLR
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