Gene PP_3865 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_3865 
Symbol 
ID1046700 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp4388783 
End bp4390738 
Gene Length1956 bp 
Protein Length651 aa 
Translation table11 
GC content64% 
IMG OID637147274 
Productphage tail protein, putative 
Protein accessionNP_745995 
Protein GI26990570 
COG category[S] Function unknown 
COG ID[COG5283] Phage-related tail protein 
TIGRFAM ID[TIGR01760] phage tail tape measure protein, TP901 family, core region 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGACA AGTTTCAGCT CAAGGCGCTG ATCACCGGCG TCGACAAGCT TTCGCCGACC 
TTGGCGGGCG TGCGCAAGAA CATCTCCACG TTCCGCAAGA ACCTGGAGAG CACCGGTCTC
GGAAAGATCG GCTGGAGCGA CATCATCACC GGCGGGGCCA TGGCGGCCCC GTTCATAGCC
GGCGCCCGTG CGGCCATCGA CTTCGAGTCG CAAATGGCCG ACGTGCGCAA GGTGGTGAAC
TTTGATACGC CGGACCAGTT CAAGAAAATG GGTGATGACA TTGGCCGTAT GTCCGAGCGA
CTGCCTATGG CGGCCACCGA CATTGCCAAG ATCGTTGCCG CGGGCGGCCA ATCCGGCATT
GCCCGTGACG AGCTGCTGGG CTTTGCCGAA GCGGCGGTAA AGATGGGTAT CGCCTTTGAC
CAGACCGCCG ACGAGTCCGG CGACATGATG ACCACGTGGC GCACCGCGTT TCGCATGAAT
CAGGCCGAGG TGGTGAGCTT GGCCGACCGC ATTAACTACT TGGGCAACAC CGGCCCGGCC
AACACCAAGA AGATTTCCGC CATCGTCACC GAGGTCGGCG CGCTGGGGGA GGTGGCCGGC
ATGTCGTCGG CGCAGGTAGC GGCTATCGGC GCGACCATGG CCGGGGTGGG TGTCAAACAG
GACGTGGCGG CCACCGGCAT CAAGAACTTC ATGTTGGCCA TGACCAAGGG CACGGCGGCC
ACTAAGGCCC AGGCAGACGC TTACAAGGCG TTGCGCCTGG ATGCCAAGAC CGTGGCCGAG
AATATGCAGA AGGATGCCCA GGGCACCACG CTGGACCTGC TCAAGCGTAT TTCTTTGATC
GATGCGGCGA AACGCCCGGC GATTCTGTCC GAGTTGTTTG GTACCGAGTC GATTACTGCC
ATTACGCCGC TGCTGACCAA TCTGGAGCTG TTGCGCAGCA ACTTGGACAA GGTCAATGAC
GCGAAAAAGT TCGCCGGCTC AATGGAGCAG GAATATGCAT CACGCGCCGC GACCACGCGT
AACAACATGA CATTGTTGCG TGGCAGCATC GATAGGGTAG CGGTTGCTAT CGGCAATGCT
TTGCTGCCCG GCATCAATGC GGTGCTCGAG CAACTGCGGC CGTGGATCAG CCATATGGCG
CAGATGATCA GCGACAACCC GCAGTTGGTG CGCGGCATCG TCATTGCCGG GGCGGCCTTC
ACCGCGCTGC GTGCGGCGGT GTTCGCGGCC ACAGTGGCCA CGCGGGTGCT CGGTGTGGCC
TTCGCGGCCA CGCCGATTGG CCTGATCGCC GCGGGGATCG CGGCGGCGGC CGGTCTGATC
GTCGCCAACT GGGAGAAGGT CGGGCCGTTC TTCAGCGCCC TGTGGGAGCT GATCAAGGCC
TACACCACGC CGTTCATGGA ATTCATTAAA AGCGTGTTTG GCTGGGCCCC GCTGGCATTG
ATCATCAAGA ACTGGGAACC GATCGTGGGC TGGTTCAAGG GGCTGTGGGA TCGGGTCAGC
CCGTACCTTG AACCACTGCT AAAGCTGTTT GGTGGCGGTG ACGGCGAGAG CCTGACGGTG
CGGGTGCAGC GCCTGGCTGA CGAGCAGAAA GCCCGTAACT CAGTGGCCGG CGGCAGCGGC
GCCCTGGTGC AGGCCAATGC CGTGCAGGTC GCGCAGGGCG TCCAGGCGGC GCGCGAGCAA
GCCTTTGGGG TAAGCCCTGA GGCGCTGTTG CGTGCGGCGA CCCCGCTGCC CGCACCGGGC
GGCCTGCTGC GGGCGTCCGG CCAACTGCCC GAGCCGGGGG CTTTACTGCG TCAATCGGCG
CAGGTGGGTG GCAAGCAGCA GCTGGAAGGG GAGGTGCGGG TGGCCTTCGA TAACTCGCCG
CCTGGCCTGC GTGTCGAGTC GGTGAAAACC AGTCAGCCCG GCGTGACCAT CACGCCGAAT
GTCGGGCGGC GAACCATGGG AGGCACCTAT GAGTGA
 
Protein sequence
MADKFQLKAL ITGVDKLSPT LAGVRKNIST FRKNLESTGL GKIGWSDIIT GGAMAAPFIA 
GARAAIDFES QMADVRKVVN FDTPDQFKKM GDDIGRMSER LPMAATDIAK IVAAGGQSGI
ARDELLGFAE AAVKMGIAFD QTADESGDMM TTWRTAFRMN QAEVVSLADR INYLGNTGPA
NTKKISAIVT EVGALGEVAG MSSAQVAAIG ATMAGVGVKQ DVAATGIKNF MLAMTKGTAA
TKAQADAYKA LRLDAKTVAE NMQKDAQGTT LDLLKRISLI DAAKRPAILS ELFGTESITA
ITPLLTNLEL LRSNLDKVND AKKFAGSMEQ EYASRAATTR NNMTLLRGSI DRVAVAIGNA
LLPGINAVLE QLRPWISHMA QMISDNPQLV RGIVIAGAAF TALRAAVFAA TVATRVLGVA
FAATPIGLIA AGIAAAAGLI VANWEKVGPF FSALWELIKA YTTPFMEFIK SVFGWAPLAL
IIKNWEPIVG WFKGLWDRVS PYLEPLLKLF GGGDGESLTV RVQRLADEQK ARNSVAGGSG
ALVQANAVQV AQGVQAAREQ AFGVSPEALL RAATPLPAPG GLLRASGQLP EPGALLRQSA
QVGGKQQLEG EVRVAFDNSP PGLRVESVKT SQPGVTITPN VGRRTMGGTY E