| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3858 |
|---|
| Symbol | |
|---|
| ID | 1046707 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 4383049 |
|---|
| End bp | 4383852 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637147267 |
|---|
| Product | tail fiber protein, putative |
|---|
| Protein accession | NP_745988 |
|---|
| Protein GI | 26990563 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.642523 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAAGA TATCCGCTTG GACGGACCTG GCCACGCCGG CCGGTGGTTA CCGCTACGGC
TCGCTGGTGG GCGGTGTGGC GCCTACACCC CTCAAGGCAG AGTGGCTCAA TATGGTTCAG
GATGAGCTGT GCAATTTTAT CCTGGCTTAC CTGCCGGCCC TGGACAAAGA CGACAACGCC
CAGATGCTCA ACGCGGCGCA GAAGATGGTC GCCAACTTCG CGCTCAAGGC CACCACTTTG
GCGGGGTACG GCATTCTTGA TGCCTACACC AAGGTGCAGA CGGACTACCT GTTGTCGCAG
AAGGCCAACT GGGCGATCAC GCTGGGTGGT TACGGCATCA CTGATGCCTA CACCAAGACC
GAAATCAACA CGCTGCTGAA CAGCAAGGCG AACAACGCCA ACACCTTGGC CGGCTATGGC
ATCGGTGATG CTTACACCAA AGGCGAGACG TACAGTCGAG CAGAGACCTA TACCAAGGTC
GAGACTGAAA GTCGCCTGAG CACCAAGCAA GATCTCAATA CGGCGGGGTT CGGCAGCTCG
GCGTCGTGGG AGCGCGATGG CTCAACCGGC GCAGTCCAAC AGTACGGTGT GTTCAACATG
GCGGCAGGCC CCAATGAGCA GACTATCCCC TTCCCGGTGA GCTTTCCTAC CGCATGCAGG
TATGTGGGGC TGACCAACCT GGAGGATGCG GCGGCCGAGG GCAATACTGT GCGCATCCTG
CGGTGGACGA ACTCTTCGGT GACCATCCTC AACTCGGGTG GTAACACCTC AACCGCCTAC
ACCTGGCATG CCAAAGGGAA CTGA
|
|---|
| Protein sequence | MQKISAWTDL ATPAGGYRYG SLVGGVAPTP LKAEWLNMVQ DELCNFILAY LPALDKDDNA
QMLNAAQKMV ANFALKATTL AGYGILDAYT KVQTDYLLSQ KANWAITLGG YGITDAYTKT
EINTLLNSKA NNANTLAGYG IGDAYTKGET YSRAETYTKV ETESRLSTKQ DLNTAGFGSS
ASWERDGSTG AVQQYGVFNM AAGPNEQTIP FPVSFPTACR YVGLTNLEDA AAEGNTVRIL
RWTNSSVTIL NSGGNTSTAY TWHAKGN
|
|---|
| |