Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_3711 |
Symbol | |
ID | 1046331 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 4233549 |
End bp | 4235060 |
Gene Length | 1512 bp |
Protein Length | 503 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637147122 |
Product | sensory box protein |
Protein accession | NP_745844 |
Protein GI | 26990419 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0503901 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCGCTCG CAGCAAACCC CGACATCATG TACCGGCTGT TGATCCAGAG CGTGGTGGAT TATGCCATCT ACCTGCTCAC CCCTGAAGGT ATCGTCGCCA ACTGGAACCC TGGCGCCCAG CGCGCCAAGG GGTACCGTGC CGAGGAAATC GTCGGCCAGC ACTACTCGTT GTTCTACACC GATGCCGAGC GCGCAGCCGG GTTGCCGGCA TTCAACCTGG AGCAGGCGCG CAGCACCGGA CGCTTTGAAG AAACGGGCGC ACGCCTGCGC AAGGACGGCA CGGCCTTCCA CGCCCATGTG GTCATCGAAG CGGTGTACGA CGATGCCGGG CAACTGGTGG GTTTCGCCAA GGTCACCCGC GACATTTCCG AACGCCACCG CCAGGAGCTC GAACTGCTGC AGGCCAAAGA GCTGGCCGAG CAGTACAGCC AGGAAATGGC CAAGCTTTCG CAGTTTCTCG ATTCGGTCAT TGCCAACATT CCCGCGAGCG TCATCGTCCA GGACCTGGAA AGCCAGCGCA TCCTGTTGGC CAATCAGCAG GCCGAACGTC TGTTCGGCGG GCCTCAGCAC AGCATGATCG GCCAGTTGCC CAGGGAATGC CTGGCACCGG CTGCCGGTGA CTATCTGGAG CAGCAATTCG TGCGGGGTGC CCGCAGCACC AAGGGGCACG CCGCCGAAAC CCGCGTCGAC ACCGCCCGCG GCCCACGCAC ACTGCGTAGC CGTACCCTGC TCAGTCAAAA CCGCGAAGGG CAGGCCGATT ACGTGTTGTT CGTGGCTGAA GACGCCACCG AAGAGCTGGC CGCCCATGCG CAGATCCACC ACATGGCGCA CCATGACGCG CTCACCGGGT TGCCCAACCG TACGCTGTTC CACGAACGGC TACGCCAGGC CCTGTTGCGC GGCAGCGAAA ACGCCAAGCT GACGGCTGCC CTGTGCCTGG ACCTGGACAA CTTCAAGAAC ATCAACGACT CCCTTGGCCA TGCGTTTGGT GACAAGTTGC TACGCGAGTT GGGCAAGCGT CTGCGCCGCG AACTGCGTGA GCACGACACC TTGGCCCGCC TGGGTGGCGA CGAGTTTGCC GTGGTGCTGA CGGGCCTGGA GGGGCGGGAT GCCGCGTGCA ATACCGCGCA GCGCCTGATC AAGGCCATCA GCCCGCCGTT CCGGATCGAA GGGCATCAGT TCGCGGTGGG GGTGAGCATC GGCATCGCCA TCGCGCCTGA TGACCATGAC CAGGCAGAGC AACTGCTGGG CTACGCTGAC ATGGCGCTGT ACCAGGCCAA GCGTAACGGC CGTAATCGTT ATGAATGCTT CGATGTCGAA CTGGACGTTG CCGCCCGCCA GCGCCGCCTG GTGGAAACCG ACCTGCGCAC AGCGCTGCAC CTGGGGCAGT TGCAGTTGCA CTACCAGCCG GTAGTCGATC ATCAGACCAG CAGCGTTACC GGTTATGAGG CGCTGCTGCG CTGGGAACAC CCGACCCGTG GCATGGTCAT GCCGATGGAC TTCATTTTCT AG
|
Protein sequence | MSLAANPDIM YRLLIQSVVD YAIYLLTPEG IVANWNPGAQ RAKGYRAEEI VGQHYSLFYT DAERAAGLPA FNLEQARSTG RFEETGARLR KDGTAFHAHV VIEAVYDDAG QLVGFAKVTR DISERHRQEL ELLQAKELAE QYSQEMAKLS QFLDSVIANI PASVIVQDLE SQRILLANQQ AERLFGGPQH SMIGQLPREC LAPAAGDYLE QQFVRGARST KGHAAETRVD TARGPRTLRS RTLLSQNREG QADYVLFVAE DATEELAAHA QIHHMAHHDA LTGLPNRTLF HERLRQALLR GSENAKLTAA LCLDLDNFKN INDSLGHAFG DKLLRELGKR LRRELREHDT LARLGGDEFA VVLTGLEGRD AACNTAQRLI KAISPPFRIE GHQFAVGVSI GIAIAPDDHD QAEQLLGYAD MALYQAKRNG RNRYECFDVE LDVAARQRRL VETDLRTALH LGQLQLHYQP VVDHQTSSVT GYEALLRWEH PTRGMVMPMD FIF
|
| |