| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3656 |
|---|
| Symbol | |
|---|
| ID | 1042580 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 4151957 |
|---|
| End bp | 4153219 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637147070 |
|---|
| Product | aromatic compound-specific porin, putative |
|---|
| Protein accession | NP_745792 |
|---|
| Protein GI | 26990367 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.755961 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.164035 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTATTG CTTTTAAAAA AACGTTGGCT TGTTCAGCAA CACTGCTAGT CGCGCCTTAT
GCTTCTGCCG CGTTCGTGGA AGACTTCAAA GGCAGCCTTG AGCTCCGGAA CTTTTACTAT
AATCGGGATT TTCGCAATGA TGGCGCCACT CAGTCCAAGC GCGATGAGTG GGCGCAAGGT
TTTATCTTGA ACCTGCAATC CGGTTTTACA GAAGGGCCAG TGGGCTTCGG TATTGATGCG
ATGGGCTTGC TGGGGGTGAA GCTTGATTCC AGCCCGGACA GAACGGGATC AGGGCTGCTG
GCCTACGATT CCGACAGGCA GGTTGAGGAT GAATACGGTA AGTTCGTGGC CACCGCCAAA
GCGAGGATGG GTAAGACAGA GTTGAGGATA GGAGGGGTAA ACCCTCTGAT GCCTCTACTC
TGGAGTAATA ACAGCCGCTT GCTGCCTCAG GTCTTTCGCG GTGGTTCGCT GACCGTCAAC
GATATCGATA AATTGACGGT AACGGCGACA AGAATCAACG CAGTGAAGCA GCGTAATTCC
ACCGATTTCG AATCACTCAC AGCCACTGGC TATGCCCCGG TTGAGGCGGA TCACTACAAC
TACCTGGCAT TTGACTTCAA GCCTGCGAAG GACATGACCT TCAGTTTGCA CGCCGCCGAA
CTTGAAGATC TCTATAAATC CTACTTCGCC GGCATTAAAG TCATCAAGCC GTTGTGGGAA
GGCAATGTGA TCGCGGATGT TCGCGTGTTC GATGCCAGCG AGACGGGCTC TAAAAAACTG
GGTGAGGTGG ACAACAGAAC GCTAAGTAGC TACTTCGCCT ACAGCATCAA GGGACACACC
ATCGGTGGCG GTTACCAGAA GGCCTGGGGC GACACCTCGT TTGCGTTCGT GAACGGCACG
GATACCTATC TGTTCGGCGA GTCGTTGGTC AGTACATTCA CTGCCCCAGA GGAGCGAGTG
TGGTTCGCAA GGTACGACTT TGATTTCGCC GCGTTGGGTG TACCGGGCTT GCTGTTCACC
ACTCGGTACA TGAAAGGTGA TGATGTTAAT CCTGATCTGC TGACCAGCCG CCAAGCTGCT
TCACTCCGCC TCAACGGGGA GGATGGCAAA GAATGGGAGC GGGTCACTGA TATCTCTTAT
GTTATTCAGA GTGGTCCGGC GAAGGGTGTT TCGTTTCAGT GGCGTAACTC CACGAACCGC
TCGACCTACG CTGACAGCGC TAATGAAAAT CGCCTGATCA TGCGCTACAC CTTCAACTTC
TAA
|
|---|
| Protein sequence | MSIAFKKTLA CSATLLVAPY ASAAFVEDFK GSLELRNFYY NRDFRNDGAT QSKRDEWAQG
FILNLQSGFT EGPVGFGIDA MGLLGVKLDS SPDRTGSGLL AYDSDRQVED EYGKFVATAK
ARMGKTELRI GGVNPLMPLL WSNNSRLLPQ VFRGGSLTVN DIDKLTVTAT RINAVKQRNS
TDFESLTATG YAPVEADHYN YLAFDFKPAK DMTFSLHAAE LEDLYKSYFA GIKVIKPLWE
GNVIADVRVF DASETGSKKL GEVDNRTLSS YFAYSIKGHT IGGGYQKAWG DTSFAFVNGT
DTYLFGESLV STFTAPEERV WFARYDFDFA ALGVPGLLFT TRYMKGDDVN PDLLTSRQAA
SLRLNGEDGK EWERVTDISY VIQSGPAKGV SFQWRNSTNR STYADSANEN RLIMRYTFNF
|
|---|
| |