Gene PP_3628 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_3628 
Symbol 
ID1046415 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp4123522 
End bp4125267 
Gene Length1746 bp 
Protein Length581 aa 
Translation table11 
GC content63% 
IMG OID637147042 
Productcholine/carnitine/betaine transporter 
Protein accessionNP_745764 
Protein GI26990339 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1292] Choline-glycine betaine transporter 
TIGRFAM ID[TIGR00842] choline/carnitine/betaine transport 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAAGG AACACATCCC CGAAACACTC GATCTTGGCG TCACAGACCC CTCGAAAACC 
GCAGAAGCCC GCCAGGATCG ACATTTCGAG GGCAAGCTTG ACTGGATCGT CTTTGGTTTC
ACCAGCCTCC TGGCCATCGC CTTCGTGCTC TGGGGCTTCC TCAACCAGGC CAGCCTGGCC
AGCAGCGCTT CCAGCGCGCA ATCCTGGGTC ATTCTCAATT TCGGCTGGTT CTTCGTGCTC
ACCTCCTCCC TCTTCGTGGT GTTCGTGCTG TGGCTGGCCG CCAGCCGTTA CGGGCGGGTG
CCGCTGGGCC GCGATGGCGA ACAGCCAGAG TTCCGCACGG TGTCCTGGGT AGCGATGATG
TTCAGCGCCG GCATGGGCAT CGGCCTGATG TTCTTCGGCG TGGCCGAGCC GCTGTCGCAC
TACATATCGC CGCCGCCCGG CTCGGCCAGC GGGCAGACCA GCGAAGCGAT GCAGGTGGCA
ATGGCCACTA CCTTGTTCCA TTGGACCCTG CACCCTTGGG CCATGTACGC CATCGTCGGC
CTGGTAATCG CCTACGGCAC CTTCCGCCGT GGCCGCTCGC AGCTGATTTC CGCCGCCTTC
CGGCCGCTGA TCGGCAAGCA CGCAAACGGC CCTCTCGGCC GCCTGATCGA CATGATGGCA
ATCTTCGCCA CGCTGTTCGG CTCGGCCGCC TCGCTGGGCC TTGGGGCGCT GCAGATTGCC
GGCGGCCTGG AATACAACGG CTGGATCGAA AGCCCCGGTA AACTGTTCTA CATCTCGATC
ATCACTCTGC TGACCATTGC CTTCGTGACC TCGGCGGTGT CGGGCATCGG CAAGGGTATC
CAGTGGCTGT CCAACACCAA CATGGTGCTG GCACTGGTGC TGGCGGTGTT CGTGTTCATG
GTCGGGCCGA CGCTGCTGAT GCTCAATCTG TTGCCGACCT CGCTCGGCAT CTACATCAAG
ATGCTGCCGG AAATGATGGC CCGCACCAAC GCCAGCGGCG GCGAACAGAT GAACAGCTGG
CTGGCCGGCT GGACCGTGTT CTACTGGGCC TGGTGGATCT CCTGGACGCC TTTCGTGGGC
ATGTTCATCG CCCGCATCAG CCGCGGTCGC ACCATTCGCC AGTTCGTTAC CGGGGTGCTG
TTGGTGCCAA GCCTGGTCAG CCTGGTGTGG TTCACCATCT TCGGTGGCGC CGCCATCGAG
GCCGTGCGCG AGGGCGCCTT CCAGCTGGCC AACGGTGCGG TCAACAGTAA TCACGCGCTG
TACCAGTTGC TGGACAGCTA CCCGCTGGCC TCGGCAACCT CGGTGCTGGT GATGATCCTG
GTGGGCATCT TTTTTGTTTC GGGTGCCGAC GCCGCCTCGC TGGTGATGGG CACGCTGTCG
GAACACGGCA CCACCGCGCC ATCGCGACGC ACAGTGATTT TCTGGGGGAC GCTGACCGGT
ACGGTGGCGG CCATCATGCT GGCGATCGGC GACCCAGGTA ACCCTGGCGA GGCACTGACC
GGGCTGCAGA ACCTGACCAT CGTCGTGGCC TTGCCATTCG TGGTGGTGAT GGTGCTGCTA
TGCCTGGCGC TGTACCGCGA CCTGCGCAAG GACCCGATGA TGCTGCGCCA CCTGCGCGGC
AACGAGCTGA TCGAGAAGGC CGTACTGTAT GGCGCGGTGA AGCATGGGGA GGAGTTCTAC
ATTGTGGTGC AGGAGAAGAA GGCATCGGCC AAGACAGCGG CAGAGGCCGA AGTAACCCGC
AACTGA
 
Protein sequence
MAKEHIPETL DLGVTDPSKT AEARQDRHFE GKLDWIVFGF TSLLAIAFVL WGFLNQASLA 
SSASSAQSWV ILNFGWFFVL TSSLFVVFVL WLAASRYGRV PLGRDGEQPE FRTVSWVAMM
FSAGMGIGLM FFGVAEPLSH YISPPPGSAS GQTSEAMQVA MATTLFHWTL HPWAMYAIVG
LVIAYGTFRR GRSQLISAAF RPLIGKHANG PLGRLIDMMA IFATLFGSAA SLGLGALQIA
GGLEYNGWIE SPGKLFYISI ITLLTIAFVT SAVSGIGKGI QWLSNTNMVL ALVLAVFVFM
VGPTLLMLNL LPTSLGIYIK MLPEMMARTN ASGGEQMNSW LAGWTVFYWA WWISWTPFVG
MFIARISRGR TIRQFVTGVL LVPSLVSLVW FTIFGGAAIE AVREGAFQLA NGAVNSNHAL
YQLLDSYPLA SATSVLVMIL VGIFFVSGAD AASLVMGTLS EHGTTAPSRR TVIFWGTLTG
TVAAIMLAIG DPGNPGEALT GLQNLTIVVA LPFVVVMVLL CLALYRDLRK DPMMLRHLRG
NELIEKAVLY GAVKHGEEFY IVVQEKKASA KTAAEAEVTR N