| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3625 |
|---|
| Symbol | |
|---|
| ID | 1046326 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 4121990 |
|---|
| End bp | 4122631 |
|---|
| Gene Length | 642 bp |
|---|
| Protein Length | 213 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637147039 |
|---|
| Product | amino acid transporter LysE |
|---|
| Protein accession | NP_745761 |
|---|
| Protein GI | 26990336 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1280] Putative threonine efflux protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.277347 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTCTC ACTCGCTGTT CGCGTTTACC CTGGTCGCCG CCATCGCGAT CGCCAGCCCA
GGCCCTGCCA CCTTGATGGC TATCAACAAC AGCCTTGCCC ATGGCCAACG CAGCGCGATC
TGGTCGTCGC TGGGCAATGG CACGGGTCTG TTCTGTCTGT CGGCAGCGGC CATGCTGGGG
CTAGGCGCAC TGCTGGCCAG TTCTGAAGTA CTGTTCAATG CCGTGAAGAT CCTGGGGGCG
GGCTACCTGT TCTACCTGGG CGCGCGACAA CTGCTGAAGA AGAGCCCGAT GCTGGAGCAG
GGGGCCGCAG AGCGTTCAGC CAAGGTGCGG CCCACGCCGC TGAAACTGTT CAAATCGGCC
TTTCTCACTG CAGTGACCAA CCCGAAGGCG ACCATGTTCT TTACTGCACT GTTCCCGCAG
TTCATCGACC AGGGGGCTGC GCTGTTGCCG CAGTTCCTGA CCTTGACCGG GATTTTCGTG
GCCTTGTCGC TCACTTCGCT AAGCGCGTAT GCCGCCCTGG CTGCGCGGGC CAAGGGGGTG
CTGACCCGGC CGTCGCTGTC GCGCTGGGTG AACAGGGTGG TGGGCACCAC CTTTATCGGT
TTTGGCGCGG CGATCCTGGC GATGCGACGG CAGGGTGCCT GA
|
|---|
| Protein sequence | MDSHSLFAFT LVAAIAIASP GPATLMAINN SLAHGQRSAI WSSLGNGTGL FCLSAAAMLG
LGALLASSEV LFNAVKILGA GYLFYLGARQ LLKKSPMLEQ GAAERSAKVR PTPLKLFKSA
FLTAVTNPKA TMFFTALFPQ FIDQGAALLP QFLTLTGIFV ALSLTSLSAY AALAARAKGV
LTRPSLSRWV NRVVGTTFIG FGAAILAMRR QGA
|
|---|
| |