Gene PP_3599 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_3599 
Symbol 
ID1046377 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp4088930 
End bp4089841 
Gene Length912 bp 
Protein Length303 aa 
Translation table11 
GC content64% 
IMG OID637147013 
Product5-dehydro-4-deoxyglucarate dehydratase 
Protein accessionNP_745735 
Protein GI26990310 
COG category[E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase 
TIGRFAM ID[TIGR03249] 5-dehydro-4-deoxyglucarate dehydratase 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.815897 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCCAC AAGAACTCAA ATCCATCCTC TCCCACGGCC TGCTGTCTTT CCCGGTCACC 
GACTTCAATG CCCAGGGCGA CTTCAACCCG GCTGGCTACA TCAAGCGCCT TGAGTGGCTG
GCCCCCTACG GCGCCAGCGC GCTGTTCGCC GCTGGCGGTA CAGGTGAATT CTTCTCCCTG
GCCGCCAGCG AATACAGCCA GGTGATCAAG ACCGCGGTCG ACACCTGCGC CACTTCGGTG
CCGATCCTCG CCGGTGTCGG TGGCTCCACC CGTCAGGCCA TCGAATACGC GCAGGAAGCC
GAGCGCCTGG GTGCCAAGGG CCTGCTGCTG CTGCCGCACT ACCTGACCGA AGCCAGCCAG
GACGGCGTCG CCGCCCACGT CGAAGCGGTG TGCAAATCGG TAAACATCGG TGTGGTGGTG
TACAACCGCA ACGTCTGCCG CCTGAACGCC GACCTGCTGG AAAAACTGGC CGAGCGCTGC
CCGAACCTGA TCGGCTACAA GGACGGCCTG GGTGATATCG AGCTGATGGT GTCGATCCGT
CGTCGCCTGG GCGAGCGCTT CAGCTACCTG GGTGGCCTGC CGACCGCCGA AGTGTATGCC
GCCGCCTACA AGGCCCTGGG CGTACCGGTG TACTCCTCCG CTGTGTTCAA CTTCGTGCCG
AAAACCGCCA TGGACTTCTA CAACGCCATC GCCCGTGACG ACCACGCCAC CGTGGCCAAG
CTGATCGACG ATTTCTTCCT GCCCTACCTG GACATCCGCA ACCGCAAGGC CGGCTACGCC
GTGAGCATCG TCAAGGCCGG CGCCAGAATT GCCGGTTACG ACGCCGGCCC GGTGCGTACC
CCGCTGACCG ACCTCACCGC CGAAGAGTAC GAAATGCTCG CCGCGCTGAT GGACAAGATG
GGCCCGCAGT AA
 
Protein sequence
MNPQELKSIL SHGLLSFPVT DFNAQGDFNP AGYIKRLEWL APYGASALFA AGGTGEFFSL 
AASEYSQVIK TAVDTCATSV PILAGVGGST RQAIEYAQEA ERLGAKGLLL LPHYLTEASQ
DGVAAHVEAV CKSVNIGVVV YNRNVCRLNA DLLEKLAERC PNLIGYKDGL GDIELMVSIR
RRLGERFSYL GGLPTAEVYA AAYKALGVPV YSSAVFNFVP KTAMDFYNAI ARDDHATVAK
LIDDFFLPYL DIRNRKAGYA VSIVKAGARI AGYDAGPVRT PLTDLTAEEY EMLAALMDKM
GPQ