| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3544 |
|---|
| Symbol | |
|---|
| ID | 1045565 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 4016096 |
|---|
| End bp | 4017505 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637146959 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | NP_745681 |
|---|
| Protein GI | 26990256 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.384624 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.66471 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGCT ACGAACGCTT CGCCGATGAC ATTGCCGAAC TGATCCGCTC CGGGGTGCTG
GGCCCCGGCC AGCGCGTGCC GTCCGTGCGC TACGCCAGCC AGACCCACGG GGTCAGCCCG
TCTACCGTGT TCCAGGCCTA TTACCTGCTG GAACGGCGCG GGCTGATCCG CGCCCGGCCG
CGCTCCGGGT ATTTCGTCAA CGCCCACGTT CCGCGTCAGT TCAGCGAGCC GCAGGCGCTG
CAGCCGGTGA GCGAGTCTAC CGATGTCGAC GTCAGCGCCT TGGTATTTTC GATCCTCGAC
TCGATCAAGG ACCCCAACAC CATTGCCTTC GGCTCAGCCT TTCCCAGCCC TGAACTGTTC
CCGCTGCAAC GCCTGTCCCG CTCACTGGCC AGTGCCAGCC GCAGCATGGA CCCGCGCATG
GTGGTGACCG ATCTGTCCCC CGGTAACCCG CAGTTGCGCC GGCAGATAGC CCTGCGCTAC
ATGGTCGGTG GGCTGATGCT GCCGATGGAA GAGCTGCTGA TCACCAACGG CGCACTGGAG
GCCCTGAACC TGTGCCTGCA GGCAGTGACC CAGCCGGGCG ATCTGGTCGC CATCGAGGCC
CCGGCCTTCT ATGCCTGCCT GCAGGTGCTG GAGCGGCTCA AGCTCAAGGC TGTGGAAATC
CCCGTGCACC CGCGCGAGGG CATGGACCTG GGGGTGCTGG CGCAGACCCT GGAAATGCAC
CCGGTAAAGG CCGTGTGGTG CATGACCAAT TTCCAGAACC CGGTGGGTGC AAGCATGCCG
GAGGCCAAGA AACAGGCCAT GGTGGAGTTG CTGGCGCGCC ATCAGGTGCC GTTGATCGAA
GACGACGTGT ACGCCGAGCT GTACTACTCG CAACAGGCGC CCAAACCCGC CAAGGCCTTC
GACACTCAGG GCCTGGTCAT GCACTGCGGC TCGTTCGCCA AAAGCCTGGC ACCGGGCTAT
CGCATTGGCT GGGTGGCCGC CGGGCGCTTT GCGCAAAAGA TCGAGCGGTT GAAACTGATG
ACCTCCCTTT GTGCTTCCAT GCCGGCCCAG GCGGCCATCG CCGACTACCT GCAACACGGC
GGCTACGACC GCCACCTGCG CAAGCTGCGC TACGCGCTGG AGGGCCAGCA GGCCAACATG
CTGGCAGCCA TCGCCCGCCA CTTCCCGGCG CAGACACGGG TCAGCCAGCC TTCCGGCGGC
TACTTCCTGT GGCTGGAACT GCCCGAGCAG ATGGACGCCC TCAAGCTGTT CCACATGGCC
CTGGCCCAAG GCATCAGCAT CGCGCCCGGG CCGATCTTTT CGCCCACCCG ACGCTTCGGC
AATTGCATCC GCCTGAACTA CGGCAGCCCC TGGCATGACG GCGCCGAACA GGCCATGGAA
ACCCTCGGGC GGATCATTCG CTCGTTCTGA
|
|---|
| Protein sequence | MKRYERFADD IAELIRSGVL GPGQRVPSVR YASQTHGVSP STVFQAYYLL ERRGLIRARP
RSGYFVNAHV PRQFSEPQAL QPVSESTDVD VSALVFSILD SIKDPNTIAF GSAFPSPELF
PLQRLSRSLA SASRSMDPRM VVTDLSPGNP QLRRQIALRY MVGGLMLPME ELLITNGALE
ALNLCLQAVT QPGDLVAIEA PAFYACLQVL ERLKLKAVEI PVHPREGMDL GVLAQTLEMH
PVKAVWCMTN FQNPVGASMP EAKKQAMVEL LARHQVPLIE DDVYAELYYS QQAPKPAKAF
DTQGLVMHCG SFAKSLAPGY RIGWVAAGRF AQKIERLKLM TSLCASMPAQ AAIADYLQHG
GYDRHLRKLR YALEGQQANM LAAIARHFPA QTRVSQPSGG YFLWLELPEQ MDALKLFHMA
LAQGISIAPG PIFSPTRRFG NCIRLNYGSP WHDGAEQAME TLGRIIRSF
|
|---|
| |