| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3456 |
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| Symbol | |
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| ID | 1045525 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 3916216 |
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| End bp | 3919344 |
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| Gene Length | 3129 bp |
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| Protein Length | 1042 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637146872 |
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| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
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| Protein accession | NP_745594 |
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| Protein GI | 26990169 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.417579 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCAAT TCTTCATCGA TCGCCCGGTA TTCGCCTGGG TGGTCGCACT GTTCATCCTG
CTGGCTGGCG CGCTGGCCAT CCCGCAACTG CCGGTGGCCC AGTACCCCAA CGTGGCACCG
CCGCAGGTGG AAATCTACGC CGTGTACCCG GGTGCCTCGG CGGCGACCAT GGACGAAAGC
GTGGTCAGCC TGATCGAACA GGAGCTCAAC GGCGCCGACA ACCTGCTGTA CTTCGAGTCG
CAGAGCAGCC TGGGCAGCGC CACCATCACC GCCACCTTCG CCCCGGGTAC CCACCCGGAC
CTGGCCCAGG TCGACGTGCA GAACCGCCTG AAAGTGGTCG AGTCGCGCCT GCCGCGCCCG
GTCACCCAGC AGGGCCTGCA GGTGGAGAAA GTGTCCACCG GCTTCCTGCT GTTGGCGACC
CTCACCTCCG AAGACGGCAA GCTCGATGAA ACCGCGCTGT CGGACATCCT TGCACGTAAC
GTGATGGACG AGATCCGCCG CCTCAAGGGC GTCGGCAAGG CCCAGTTGTA TGGCTCCGAA
CGGGCCATGC GCATCTGGAT CGACCCGCGC AAGCTGATCG GTTTCAACCT CACGCCCAAC
GATGTAGCCG AAGCCATCGC CGCGCAGAAC GCCCAGGTCG CCCCTGGCAG CATCGGCGAT
CTGCCCAGCC GCAGCACCCA GGAAATCACC GCCAACGTGG TGGTCAAAGG CCAGTTGAGC
AGCCCCGACG AGTTTGCTGC CATTGTCCTG CGTGCCAACC CGGACGGCTC CACGGTCACC
ATCGGGGATG TCGCCCGGGT TGAAATCGGT GCCCAGGAAT ACCAGTACGG CACGCGCCTG
AACGGCAAAC CGGCCACGGC CTTCAGCGTG CAGTTGTCAC CCGGCGCCAA CGCCATGGAA
ACCGCTACCC TGGTACGGGC GAAGATGCAG GACCTGGCGC GCTACTTCCC GGAAGGCGTC
AAGTACGACA TCCCCTACGA CACCTCGCCG TTCGTCAAGG TGTCGATCGA GCAGGTCATC
AACACCCTGT TCGAGGCCAT GCTGCTGGTG TTCGCAGTCA TGTTCCTGTT CCTGCAGAAC
CTGCGCTACA CGCTGATCCC GACCCTGGTC GTGCCAGTGG CATTGATGGG CACCTTCGCC
GTGATGCTGG CCATGGGCTT CTCGGTCAAT GTGCTGACAC TGTTCGGCAT GGTGCTGGCC
ATCGGCATTC TGGTCGACGA TGCCATCGTG GTGGTGGAGA ACGTCGAGCG CATCATGGCC
GAAGAAGGCT TGCCGCCCAA GCAAGCCACG CGCAAGGCCA TGGGCCAGAT CAGCGGTGCA
ATCGTCGGCA TCACGCTGGT GCTGGTGGCG GTATTCCTGC CCATGGCCTT CATGCAAGGC
TCGGTGGGGG TGATCTACCA GCAGTTCTCG CTGTCGATGG CGGTGTCGAT CCTGTTCTCG
GCGTTTCTCG CCCTCAGCCT GACCCCGGCA TTGTGCGCCA CCCTGCTCAA GCCCGTGGCC
AAGGGCGAGC ACCATGAACG CAAAGGCTTC TTCGGCTGGT TCAATCGCCG CTTCGAAAGC
ATGAGCAACG GCTACCAGCG CTGGGTAGTG CAGGCGCTCA AGCGCAGCGG CCGCTACCTG
CTGGTGTACG CGGTGCTGCT GGCGGTGCTG GGCTACGGTT TCAGCCAGCT GCCTACGGCG
TTCCTGCCTA CCGAAGACCA AGGCTACACC ATCACCGACA TTCAGCTGCC GCCGGGCGCC
AGCCGCATGC GCACCGAACA GGTAGCCGCG CAGATCGAGG CGCACAACGC CGAAGAACCG
GGCGTGGGCA ACACCACCTT GATCCTCGGC TTCAGCTTCT CCGGTAGCGG GCAGAACGCG
GCGCTGGCCT TCACCACCCT CAAGGACTGG TCCGAGCGCG GCGCCGACGA CAGCGCCCAG
TCGATCGCCG ACCGCGCGAC CATGGCCTTC ACCCAGCTCA AGGACGCGAT TGCCTATTCG
GTACTGCCGC CCCCCATTGA CGGCCTCGGT GAGTCGACCG GTTTCGAATT TCGCCTTCAG
GACCGTGGCG GCATGGGCCA CGCCGAGCTG ATGGCAGCCC GTGACCAGCT GCTCGAAAGC
GCCAGCAAAA GCAAGGTGCT GACCAACGTG CGCGAAGCCT CGCTGGCGGA AAGCCCGCAG
GTGCAACTGG AAATCGACCG CCGCCAGGCT AATGCACTGG GTGTGTCGTT TGCCGATATC
GGCACGGTGC TGGACGTGGC CGTGGGCTCC AGCTACGTCA ACGATTTCCC CAACCAGGGC
CGCATGCAGC GGGTGGTGGT GCAGGCCGAA GGTGACCAGC GCAGCCAGGT CGAAGACTTG
CTGAACATTC ACGTGCGCAA CGACAGCGGC AAGATGGTGC CACTGGGCGC GTTCGTGCAG
GCCAGGTGGG TCAGCGGCCC GGTGCAACTG ACCCGCTACA ACGGTTACCC GGCGGTGTCG
ATCTCAGGCG AGCCTGCCGC CGGCTACAGC TCGGGCGAGG CCATGGCCGA AGTCGAGCGG
CTGGTGGCGC AGCTACCGGC CGGTACCGGT CTGGAATGGA CCGGCCTGTC ACTGCAGGAG
CGGCTGTCCG GTAGCCAGGC CCCCCTGCTG ATGGCGCTGT CGCTGCTGGT GGTGTTCCTG
TGCCTGGCAG CGCTGTACGA AAGCTGGTCG ATCCCGACTG CGGTGCTGCT GGTCGTTCCG
CTCGGTGTGC TCGGTGCGGT GCTGGCGGTG ACCTTGCGCG GCATGCCCAA CGACGTGTTC
TTCAAGGTTG GCCTGATTAC CCTGATCGGC CTGTCGGCGA AGAACGCCAT CCTGATCATC
GAGTTCGCCA AGCATCTGGT TGACCAGGGC GTGGACGCCG CCGACGCCGC CGTGCAAGCG
GCCCGCCTGC GCCTGCGGCC GATCGTGATG ACGTCGCTGG CGTTCATCCT CGGCGTGGTG
CCCCTGGCCA TCGCCAGCGG CGCAAGCTCT GCCAGCCAGC AGGCGATTGG CACCGGGGTG
ATCGGCGGCA TGCTCAGCGC CACCCTGGCG GTGGTGTTCG TGCCGGTGTT CTTCGTGGTG
GTGATGCGCC TGTCCGGGCG ACGCCAGGCG CATGACAGCG ACGGGCAACC CGTGCCCCGC
GAAAGCTGA
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| Protein sequence | MPQFFIDRPV FAWVVALFIL LAGALAIPQL PVAQYPNVAP PQVEIYAVYP GASAATMDES
VVSLIEQELN GADNLLYFES QSSLGSATIT ATFAPGTHPD LAQVDVQNRL KVVESRLPRP
VTQQGLQVEK VSTGFLLLAT LTSEDGKLDE TALSDILARN VMDEIRRLKG VGKAQLYGSE
RAMRIWIDPR KLIGFNLTPN DVAEAIAAQN AQVAPGSIGD LPSRSTQEIT ANVVVKGQLS
SPDEFAAIVL RANPDGSTVT IGDVARVEIG AQEYQYGTRL NGKPATAFSV QLSPGANAME
TATLVRAKMQ DLARYFPEGV KYDIPYDTSP FVKVSIEQVI NTLFEAMLLV FAVMFLFLQN
LRYTLIPTLV VPVALMGTFA VMLAMGFSVN VLTLFGMVLA IGILVDDAIV VVENVERIMA
EEGLPPKQAT RKAMGQISGA IVGITLVLVA VFLPMAFMQG SVGVIYQQFS LSMAVSILFS
AFLALSLTPA LCATLLKPVA KGEHHERKGF FGWFNRRFES MSNGYQRWVV QALKRSGRYL
LVYAVLLAVL GYGFSQLPTA FLPTEDQGYT ITDIQLPPGA SRMRTEQVAA QIEAHNAEEP
GVGNTTLILG FSFSGSGQNA ALAFTTLKDW SERGADDSAQ SIADRATMAF TQLKDAIAYS
VLPPPIDGLG ESTGFEFRLQ DRGGMGHAEL MAARDQLLES ASKSKVLTNV REASLAESPQ
VQLEIDRRQA NALGVSFADI GTVLDVAVGS SYVNDFPNQG RMQRVVVQAE GDQRSQVEDL
LNIHVRNDSG KMVPLGAFVQ ARWVSGPVQL TRYNGYPAVS ISGEPAAGYS SGEAMAEVER
LVAQLPAGTG LEWTGLSLQE RLSGSQAPLL MALSLLVVFL CLAALYESWS IPTAVLLVVP
LGVLGAVLAV TLRGMPNDVF FKVGLITLIG LSAKNAILII EFAKHLVDQG VDAADAAVQA
ARLRLRPIVM TSLAFILGVV PLAIASGASS ASQQAIGTGV IGGMLSATLA VVFVPVFFVV
VMRLSGRRQA HDSDGQPVPR ES
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