| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3435 |
|---|
| Symbol | |
|---|
| ID | 1046455 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 3891014 |
|---|
| End bp | 3892600 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637146851 |
|---|
| Product | diguanylate phosphodiesterase |
|---|
| Protein accession | NP_745573 |
|---|
| Protein GI | 26990148 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.557129 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCTTA CCGTCAAACG CCGCGCCGCA CTCAGCTGGC GCACGCTCTT GCCCTGGGTC
GTCGGCGTGC TGCCGGTCAT GTGCGGCCTG GCCGTGATGA ACTGGCAGGT CGAACGTGAA
ATGCAGGCCA GCAGCCACGC CACCACCCGC CAGGCGTTGG AGCACGTCGA ACACATCCTC
GACAACCTGT CCCGTGCCGC CAATTCGCTA CTTCCACTGA CTGACAGCCC ATGCGAGCAG
GCCCAGCTCA TGCTGCGGGC CCAGGTTACC CGCAATGCCT TCGTGCGCTC GACCAACCTG
TTCAGGCACA ACAACCTTTA TTGCTCCTCG CTGTTCGGCG AGTTCGAAGA ACCGGTCAAT
CCTGGCGATT ACGTCGACGG CAAGTTATGG CTGATGGACG GCAACTCGGT TACCCCGGGC
CACCCGCTGC TGGTCTACCG TGCCAGCGAC GGCGACCACG GTGCAATCAC CACGGTGGAT
GGCGACCACC TGCTGACAGC ACTGCGCCTG ATCGGCCCCG ATGAAGAATT GCAAATCCGC
GTGGGCGACG CCTGGATGGG CAAGGACGGC GTGGTCCACA AAGGCGCCTC CCCTGCCGCC
GCCAGTGCCA ACGTGCTGAT AGGCTCGACG CGTTACCCTT TCAGCGTGCA GGGCGGCTAC
AGTGCCGACA AGCAAGGCCA ACTGTTACGC AGCCACTACC CTGGCCTGCT CAGCCTGCTG
CTGATACTGG GTGCCCTGGC GGCGCTGGCA TGCCGCTGGC AGATTCGCCG CGCCACCTCA
CCGCGTGCCG AACTGGACCG TGCCCTGCAG GCCGATGAAT TCCTGCCGTA TTTTCAGCCA
GTGGTGCGCA AGGGCGATTA CCGCTGGGCC GGTGCGGAAG TGCTGATGCG CTGGCACCAC
CCACGCGAAG GCCTGGTTCG TCCCGACCTG TTCATCCCCT ATGCCGAACA TAGCGGGCAG
ATTGTCGCCA TGACCCGTGC GCTGCTGACA CATACCGCGC AAAGCCTGGC GCCCTATGCC
GGCCTGTTGG AAGACGGCTT CCATATTGGT GTCAACATCA CCGCTGACCA CTGCCGCGAC
CTCAGCCTGC TGGATGACTG CCGCACGTTC CTGCAGCACT TTCCGCCCGG CCGGGTGGTG
CTGACCCTGG AACTGACAGA GCGCAAGCTG ATCGAGCCTA CGCCGGTCAC CCTTGAGTTG
TTCGAAAAGC TGCATGCCAT GGGCGTGATG ATTGCCCTCG ACGATTTCGG CACCGGCCAG
TCGAGCCTCA ACTACCTGCG GCAATTCAAG GTCGACTACC TGAAGATCGA CCAGAGCTTC
GTTGCCATGA TCGGCGCCGA TGCGCTGTCA GTGCACATAC TCGAGACCAT CATCGAGCTG
TCGGGCAAGC TGGACCTGGG CATCGTTGCC GAGGGTGTGG AAACCGACCT GCAGCGCGAC
TACCTGGCCG CGCACGGGGT GGACTTCCAG CAGGGTTACC TGTTCGCCAG ACCCATGCCG
GCCGCCCAGT TCCTCGAAGC CCTGGCCACT CGCCCGGGCG CAACGCAGTT GCCGCAAGAT
GCGCCCCCTG AGATCATGCG CGGCTGA
|
|---|
| Protein sequence | MPLTVKRRAA LSWRTLLPWV VGVLPVMCGL AVMNWQVERE MQASSHATTR QALEHVEHIL
DNLSRAANSL LPLTDSPCEQ AQLMLRAQVT RNAFVRSTNL FRHNNLYCSS LFGEFEEPVN
PGDYVDGKLW LMDGNSVTPG HPLLVYRASD GDHGAITTVD GDHLLTALRL IGPDEELQIR
VGDAWMGKDG VVHKGASPAA ASANVLIGST RYPFSVQGGY SADKQGQLLR SHYPGLLSLL
LILGALAALA CRWQIRRATS PRAELDRALQ ADEFLPYFQP VVRKGDYRWA GAEVLMRWHH
PREGLVRPDL FIPYAEHSGQ IVAMTRALLT HTAQSLAPYA GLLEDGFHIG VNITADHCRD
LSLLDDCRTF LQHFPPGRVV LTLELTERKL IEPTPVTLEL FEKLHAMGVM IALDDFGTGQ
SSLNYLRQFK VDYLKIDQSF VAMIGADALS VHILETIIEL SGKLDLGIVA EGVETDLQRD
YLAAHGVDFQ QGYLFARPMP AAQFLEALAT RPGATQLPQD APPEIMRG
|
|---|
| |