| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3426 |
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| Symbol | mexF |
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| ID | 1046214 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 3878163 |
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| End bp | 3881342 |
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| Gene Length | 3180 bp |
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| Protein Length | 1059 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637146842 |
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| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
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| Protein accession | NP_745564 |
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| Protein GI | 26990139 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.96069 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTTCT CGAAATTCTT CATTACCCGG CCGATCTTCG CCGCGGTGCT GTCGCTGGTG
CTGCTGATCG CGGGTTCCAT CTCGCTGTTC CAGCTGCCGA TCAGCGAATA CCCCGAAGTG
GTGCCGCCCA CCGTGGTGGT GCGCGCCAAC TTCCCCGGCG CCAACCCCAA GGTCATCGGC
GAAACCGTTG CCGCGCCGCT GGAGCAGGCC ATTACCGGTG TGGAGAACAT GCTGTACATG
TCCTCCCAGT CCACTGCGGA CGGCAAGCTG ACGCTGACCA TCACCTTCGC CCTGGGTACC
GACCTGGACA ACGCCCAGGT GCAGGTGCAG AACCGCGTCA CCCGTACCCA GCCCAAGCTG
CCCGAGGAAG TGACCCGTAT CGGTATCACC GTCGACAAGG CCTCGCCTGA CCTGACCATG
GTCGTGCACC TGACCTCGCC GGACAACCGC TACGACATGC TCTATCTGTC CAACTACGCC
ATCCTCAACA TCAAGGACGA GCTGGCGCGC CTGGGCGGCG TAGGCGACGT GCAGCTGTTT
GGCATGGGCG ACTACTCGCT GCGCGTCTGG CTGGACCCGA ACAAGACCGC TTCGCGCAAC
CTGACGGCCA GTGATGTGGT CGCGGCAATC CGCGAGCAGA ACCGCCAGGT GGCCGCCGGC
CAGCTGGGCG CGCCGCCTGC CCCAGGCTCG ACCAGCTTCC AGCTGTCGAT CAATACCCAA
GGCCGCCTGG TCAACGAGGA AGAGTTCGAA AACATCATCA TCCGCGCCGG TGCCGATGGC
GAGATCACCC GCCTGAAAGA CATCGCCCGG GTCGAACTCG GCTCCAGCCA GTACGCCCTG
CGCTCGCTGC TGAACAACCA GCCGGCGGTG GCCATCCCGA TTTTCCAGCG CCCAGGCTCC
AACGCCATCG AGATCTCCGA CGAAGTGCGG GCGAAAATGG CCGAGCTGAA AAAGGACTTC
CCGGAAGGGA TGGACTACAG CATCGTCTAT GACCCGACCA TCTTCGTGCG CGGCTCCATC
GAAGCGGTGG TGCACACCCT GTTCGAAGCC CTGGTGCTGG TGGTGCTGGT GGTGATCCTG
TTCCTGCAGA CCTGGCGCGC CTCGATCATC CCGCTGCTGG CGGTGCCGGT CTCGCTGATC
GGTACCTTCG CGGTCATGCA CCTGTTCGGT TTTTCACTTA ACGCGCTGTC GTTATTCGGG
CTGGTGCTCG CCATCGGTAT CGTGGTGGAC GATGCCATCG TCGTGGTGGA GAACGTCGAA
CGTAACATCG GGCTGGGCCT GAAACCGCTG GAAGCCACGC AAAAGGCCAT GAGCGAAGTG
ACCGGCCCGA TCATCGCCAC CGCCCTGGTG CTGTGCGCGG TGTTCGTACC TGCAGCGTTC
ATTTCCGGCC TTACCGGGCA GTTCTACAAG CAGTTCGCCC TGACCATCGC CATCTCGACC
GTCATTTCGG CGTTCAACTC GCTGACCCTG TCGCCAGCCT TGGCCGCGGT GCTGCTCAAG
GATCATCACG CACCCAAGGA CCGTTTCTCG CGGTTCCTCG ACAAGCTGCT GGGCAGCTGG
CTGTTCTCCC CTTTCAACCG GTTCTTCGAC CGGGCCAGCC ACAGCTACGT CGGTGGCGTG
CGCCGGGTCA TCCGCTCCAG CGGCATCGCC CTGTTCGTGT ATGCCGGCCT GATGGGTCTG
ACCTACCTCG GCTTCTCGTC CACGCCGACC GGTTTCGTGC CGGCCCAGGA CAAGCAGTAC
CTGGTGGCCT TCGCCCAACT GCCGGACGCG GCCAGCCTCG ACCGTACCGA AGCGGTGATC
AAGCGCATGA GCGAAATCGC CCTGAAGCAG CCTGGCGTGG CCGACTCGGT AGCCTTCCCG
GGCCTGTCGA TCAACGGTTT CACCAACAGC CCCAACAGCG GCATCGTGTT CACCCCGCTC
AAACCATTCG ATGAGCGCAA GGACCCGAGC CAGTCGGCGG CAGCCATCGC AGCCGCGCTG
AATGCCCAGT TCGCCGACAT CCAGGACGCC TACATCGCCA TCTTCCCACC GCCGCCGGTA
CAGGGCCTGG GCACGATTGG CGGGTTCCGT CTGCAAATCG AAGACCGTGG CAACCTGGGT
TACGAAGCGC TGTACAAGGA AACCCAGAAC ATCATCGCCA AGAGCCACAA CGTCCCAGAG
CTGGCAGGCC TGTTCACCAG CTACCAGGTC AACGTGCCAC AAGTCGATGC CGCCATCGAC
CGGGAAAAGG CCAAGACCCA CGGTGTGGCG ATCACCGACA TCTTCGACAC CCTGCAGGTT
TACCTGGGCT CGCTGTACAC CAACGACTTC AACCGCTTTG GCCGCACTTA CCAGGTCAAC
GTCCAGGCCG AGCAGCAGTT CCGCCTTGAT GCCGAGCAGA TCGGCCAACT GAAAGTGCGC
AACAACCTTG GCGAGATGAT CCCGCTGGCG ACCTTCCTCA AGGTCAGCGA CACCTCCGGG
CCGGACCGGG TCATGCACTA CAACGGCTTC ATCACTGCCG AGATCAACGG CGCTGCCGCC
CCGGGCTACA GCTCTGGTCA GGCGGAAGCT GCGATCGAGA AGCTGCTGAA GGAAGAACTG
CCCAACGGCA TGACCTTCGA GTGGACCGAC CTGACCTACC AGCAGATCCT CTCGGGCAAT
ACCGCATTGC TGGTGTTCCC GCTGTGCGTA CTGCTGGCGT TCCTGGTGCT GGCCGCCCAG
TACGAAAGCT GGAGCCTGCC GCTGGCGGTG ATCCTGATCG TGCCGATGAC CCTGCTGTCG
GCCATCACCG GTGTGATCGT ATCGGGTGGC GACAACAACA TCTTCACCCA GATCGGCCTG
ATCGTACTGG TGGGCCTGGC GTGCAAGAAC GCGATCCTGA TCGTCGAGTT CGCCAAGGAC
GAACAGGCCA AGGGCCTCGA CCCGCTGGCT GCGGTACTGG AAGCCTGCCG CCTGCGCCTG
CGGCCGATCC TGATGACCTC GATCGCCTTC ATCATGGGTG TGGTGCCCCT GGTGTTCAGC
TCCGGCGCAG GTTCGGAAAT GCGCCATGCC ATGGGGGTGG CGGTGTTCTC GGGGATGATC
GGCGTGACCG TGTTCGGCCT GTTCCTCACC CCGGTGTTCT TCTTCCTGAT CCGCCGTTTC
GTCGAGCGTC GCCAGGCCCG CAAGGCTGAA CACGCTCAAG TGCTGGAGAA CCACGCATGA
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| Protein sequence | MNFSKFFITR PIFAAVLSLV LLIAGSISLF QLPISEYPEV VPPTVVVRAN FPGANPKVIG
ETVAAPLEQA ITGVENMLYM SSQSTADGKL TLTITFALGT DLDNAQVQVQ NRVTRTQPKL
PEEVTRIGIT VDKASPDLTM VVHLTSPDNR YDMLYLSNYA ILNIKDELAR LGGVGDVQLF
GMGDYSLRVW LDPNKTASRN LTASDVVAAI REQNRQVAAG QLGAPPAPGS TSFQLSINTQ
GRLVNEEEFE NIIIRAGADG EITRLKDIAR VELGSSQYAL RSLLNNQPAV AIPIFQRPGS
NAIEISDEVR AKMAELKKDF PEGMDYSIVY DPTIFVRGSI EAVVHTLFEA LVLVVLVVIL
FLQTWRASII PLLAVPVSLI GTFAVMHLFG FSLNALSLFG LVLAIGIVVD DAIVVVENVE
RNIGLGLKPL EATQKAMSEV TGPIIATALV LCAVFVPAAF ISGLTGQFYK QFALTIAIST
VISAFNSLTL SPALAAVLLK DHHAPKDRFS RFLDKLLGSW LFSPFNRFFD RASHSYVGGV
RRVIRSSGIA LFVYAGLMGL TYLGFSSTPT GFVPAQDKQY LVAFAQLPDA ASLDRTEAVI
KRMSEIALKQ PGVADSVAFP GLSINGFTNS PNSGIVFTPL KPFDERKDPS QSAAAIAAAL
NAQFADIQDA YIAIFPPPPV QGLGTIGGFR LQIEDRGNLG YEALYKETQN IIAKSHNVPE
LAGLFTSYQV NVPQVDAAID REKAKTHGVA ITDIFDTLQV YLGSLYTNDF NRFGRTYQVN
VQAEQQFRLD AEQIGQLKVR NNLGEMIPLA TFLKVSDTSG PDRVMHYNGF ITAEINGAAA
PGYSSGQAEA AIEKLLKEEL PNGMTFEWTD LTYQQILSGN TALLVFPLCV LLAFLVLAAQ
YESWSLPLAV ILIVPMTLLS AITGVIVSGG DNNIFTQIGL IVLVGLACKN AILIVEFAKD
EQAKGLDPLA AVLEACRLRL RPILMTSIAF IMGVVPLVFS SGAGSEMRHA MGVAVFSGMI
GVTVFGLFLT PVFFFLIRRF VERRQARKAE HAQVLENHA
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