Gene PP_3400 details

Gene Information

• Locus tag: PP_3400
• Symbol: alkB
• ID: 1046505
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas putida KT2440
• Kingdom: Bacteria
• Replicon accession: NC_002947
• Strand: +
• Start bp: 3852610
• End bp: 3853257
• Gene Length: 648 bp
• Protein Length: 215 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 637146817
• Product: 2OG-Fe(II) oxygenase
• Protein accession: NP_745539
• Protein GI: 26990114
• COG category: [L] Replication, recombination and repair
• COG ID: [COG3145] Alkylated DNA repair protein
• TIGRFAM ID: [TIGR00568] DNA alkylation damage repair protein AlkB

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 14
• Fosmid unclonability p-value: 0.801415
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGATCCAGT CCGACCTCGA CCTGTTCGGC CCCCAGCCGC AACGCCTGGC CAGCCACACC 
GTGCTGCTGC CCGGCTTCGC CCTGGCCGAA ACCGAGGCGC TGCTCGATGC CCTGCGTCCG 
GTGCTGCGTG CTGCGCCGTT CCGGCACATG TACACCCCAG GAGGCCTGCG CATGGCAGTG 
GCCCTGACCA ACTGCGGTAC GCTGGGGTGG GTGAGTGATC AACATGGCTA CCGATACAGC 
CCCAGCGACC CAGTCAGTGG CCAGCCCTGG CCCGCCCTGC CCCCGGTTCT GCTCGCCTTG 
GCCTCCCGCG CCGCAGCCAT GGCCGGGTTT GACGGTTTCG TGCCGGATGC CTGCCTGGTC 
AACCATTACC TGCCGGGCAC GCGCCTGAGC CTGCACCAGG ACCGCGACGA GCAGGATTTC 
GGTCAGCCGA TCGTGTCGGT GTCGCTGGGC TTACCGGCGG TGTTCCTGTT CGGCGGCCTG 
CAGCGTGCCG ACAAGGCTCA GCGCATTGCG CTGAGCCACG GCGATGTGCT GGTCTGGGGT 
GGCGTAGACC GCTTGCGCTT CCACGGCGTG CTACCGATCA AACCCGGCGT GCATCCGCGC 
CTGGGCGAAC GGCGGATCAA CCTGACCTTG CGCAAGGCGG GTGCCTGA 

 

Protein sequence

MIQSDLDLFG PQPQRLASHT VLLPGFALAE TEALLDALRP VLRAAPFRHM YTPGGLRMAV 
ALTNCGTLGW VSDQHGYRYS PSDPVSGQPW PALPPVLLAL ASRAAAMAGF DGFVPDACLV 
NHYLPGTRLS LHQDRDEQDF GQPIVSVSLG LPAVFLFGGL QRADKAQRIA LSHGDVLVWG 
GVDRLRFHGV LPIKPGVHPR LGERRINLTL RKAGA